@Override public boolean register(SBase sbase) { boolean success = true; if (sbase instanceof SpatialNamedSBase) { SpatialNamedSBase spatialSBase = (SpatialNamedSBase) sbase; if (spatialSBase.isSetSpatialId()) { String id = spatialSBase.getSpatialId(); if (spatialIdMap == null) { spatialIdMap = new HashMap<String, SpatialNamedSBase>(); } if (spatialIdMap.containsKey(id)) { logger.error(MessageFormat.format( "The spatial id \"{0}\" is already present in the spatial model assigned to the model {1}. The new element will not be added to the model.", id, (isSetExtendedSBase() ? getExtendedSBase().getId() : ""))); success = false; } else { spatialIdMap.put(id, spatialSBase); if (logger.isDebugEnabled()) { logger.debug(MessageFormat.format("registered spatial id={0} in {1}", id, (isSetExtendedSBase() ? getExtendedSBase().getElementName() : ""))); } } } } else { logger.error(MessageFormat.format( "Trying to register something that does not have a spatialId: \"{0}\".", sbase)); } // Register all spatial model children if any return success; }
logger.warn(MessageFormat.format( "No elements with spatial ids have been registered in this {0}. Nothing to be done.", (isSetExtendedSBase() ? getExtendedSBase().getElementName() : ""))); return success; if (logger.isDebugEnabled()) { logger.debug(MessageFormat.format("unregistered spatial id={0} in {1}", id, (isSetExtendedSBase() ? getExtendedSBase().getElementName() : "")));
ValidationConstraint.logError(ctx, CORE_10313, m, m.getSubstanceUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10313, m, m.getVolumeUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10313, m, m.getAreaUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10313, m, m.getLengthUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10313, m, m.getTimeUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10313, m, m.getExtentUnits(), m.getElementName(), m.getId()); isCheckValid = false;
bundle.getString("SBMLCoreParser.unknownReferenceError1"), "UnitDefinition", "areaUnitsID", model.getAreaUnits(), model.getElementName(), SBMLtools.getIdOrName(model))); bundle.getString("SBMLCoreParser.unknownReferenceError1"), "Parameter", "conversionFactorID", model.getConversionFactor(), model.getElementName(), SBMLtools.getIdOrName(model))); bundle.getString("SBMLCoreParser.unknownReferenceError1"), "UnitDefinition", "extentUnitsID", model.getExtentUnits(), model.getElementName(), SBMLtools.getIdOrName(model))); bundle.getString("SBMLCoreParser.unknownReferenceError1"), "UnitDefinition", "lengthUnitsID", model.getLengthUnits(), model.getElementName(), SBMLtools.getIdOrName(model))); bundle.getString("SBMLCoreParser.unknownReferenceError1"), "UnitDefinition", "substanceUnitsID", model.getSubstanceUnits(), model.getElementName(), SBMLtools.getIdOrName(model))); bundle.getString("SBMLCoreParser.unknownReferenceError1"), "UnitDefinition", "timeUnitsID", model.getTimeUnits(), model.getElementName(), SBMLtools.getIdOrName(model))); bundle.getString("SBMLCoreParser.unknownReferenceError1"), "UnitDefinition", "volumeUnitsID", model.getVolumeUnits(), model.getElementName(), SBMLtools.getIdOrName(model)));
ValidationConstraint.logError(ctx, CORE_10311, m, m.getSubstanceUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, invalidUnits, m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, m.getVolumeUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, invalidUnits, m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, m.getAreaUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, invalidUnits, m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, m.getLengthUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, invalidUnits, m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, m.getTimeUnits(), m.getElementName(), m.getId()); isCheckValid = false; ValidationConstraint.logError(ctx, CORE_10311, m, invalidUnits, m.getElementName(), m.getId()); isCheckValid = false;