private void addProteinSubstitutionScore(ConsequenceType consequenceType, Score score) { ProteinVariantAnnotation proteinVariantAnnotation = consequenceType.getProteinVariantAnnotation(); List<Score> proteinSubstitionScores; if(proteinVariantAnnotation==null) { proteinVariantAnnotation = new ProteinVariantAnnotation(); consequenceType.setProteinVariantAnnotation(proteinVariantAnnotation); proteinSubstitionScores = new ArrayList<>(); proteinVariantAnnotation.setSubstitutionScores(proteinSubstitionScores); } else { proteinSubstitionScores = proteinVariantAnnotation.getSubstitutionScores(); } proteinSubstitionScores.add(score); }
proteinVariantAnnotation.setSubstitutionScores(getSubstitutionScores(query, null).getResult());
proteinVariantAnnotation.setSubstitutionScores(getSubstitutionScores(query, null).getResult());
scores.add(score); protVarAnnotation.setSubstitutionScores(scores);