if (StringUtils.isNotEmpty(protVarAnnotation.getUniprotVariantId())) { uniprotVariantId = protVarAnnotation.getUniprotVariantId(); xrefs.add(uniprotVariantId);
addNotNull(xrefs, proteinVariantAnnotation.getUniprotVariantId());
putNotNull(ct, CT_PROTEIN_UNIPROT_ACCESSION, proteinVariantAnnotation.getUniprotAccession()); putNotNull(ct, CT_PROTEIN_UNIPROT_NAME, proteinVariantAnnotation.getUniprotName()); putNotNull(ct, CT_PROTEIN_UNIPROT_VARIANT_ID, proteinVariantAnnotation.getUniprotVariantId()); putNotNull(ct, CT_PROTEIN_FUNCTIONAL_DESCRIPTION, proteinVariantAnnotation.getFunctionalDescription()); xrefs.add(convertXrefToStorage(proteinVariantAnnotation.getUniprotName(), "UniProt")); if (StringUtils.isNotEmpty(proteinVariantAnnotation.getUniprotVariantId())) { xrefs.add(convertXrefToStorage(proteinVariantAnnotation.getUniprotVariantId(), "UniProt"));
String inUniprotName = inCT.getProteinVariantAnnotation().getUniprotName() == null ? "" : inCT.getProteinVariantAnnotation().getUniprotName(); String outUniprotName = outCT.getProteinVariantAnnotation().getUniprotName() == null ? "" : outCT.getProteinVariantAnnotation().getUniprotName(); String inUniprotVariantId = inCT.getProteinVariantAnnotation().getUniprotVariantId() == null ? "" : inCT.getProteinVariantAnnotation().getUniprotVariantId(); String outUniprotVariantId = outCT.getProteinVariantAnnotation().getUniprotVariantId() == null ? "" : outCT.getProteinVariantAnnotation().getUniprotVariantId(); System.out.println(inUniprotAccession + " vs " + outUniprotAccession + " ; " + inUniprotName + " vs " + outUniprotName
.setReference(proteinAnnotation.getReference()) .setAlternate(proteinAnnotation.getAlternate()) .setUniprotVariantId(proteinAnnotation.getUniprotVariantId()) .setFunctionalDescription(proteinAnnotation.getFunctionalDescription());