/** Retrieve the total number of planes in given series. */ protected int getPlaneCount(int series) { MetadataRetrieve r = getMetadataRetrieve(); int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getPixelsSizeC(series).getValue().intValue(); c /= r.getChannelSamplesPerPixel(series, 0).getValue().intValue(); return z * c * t; }
/** Retrieve the total number of planes in given series. */ protected int getPlaneCount(int series) { MetadataRetrieve r = getMetadataRetrieve(); int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getPixelsSizeC(series).getValue().intValue(); c /= r.getChannelSamplesPerPixel(series, 0).getValue().intValue(); return z * c * t; }
int sizeC = retrieve.getChannelCount(series); int sizeT = retrieve.getPixelsSizeT(series).getValue(); int sizeZ = retrieve.getPixelsSizeZ(series).getValue(); int[] coordinates = FormatTools.getZCTCoords(order.getValue(), sizeZ, sizeC, sizeT, sizeZ*sizeC*sizeT, image);
int sizeC = retrieve.getChannelCount(series); int sizeT = retrieve.getPixelsSizeT(series).getValue(); int sizeZ = retrieve.getPixelsSizeZ(series).getValue(); int[] coordinates = FormatTools.getZCTCoords(order.getValue(), sizeZ, sizeC, sizeT, sizeZ*sizeC*sizeT, image);
private int planeCount(final int imageIndex) { final MetadataRetrieve r = getMetadata().getOmeMeta().getRoot(); final int z = Math.max(1, // r.getPixelsSizeZ(imageIndex).getValue().intValue()); final int t = Math.max(1, // r.getPixelsSizeT(imageIndex).getValue().intValue()); int c = r.getChannelCount(imageIndex); final String pixelType = r.getPixelsType(imageIndex).getValue(); final int bytes = FormatTools.getBytesPerPixel(pixelType); if (bytes > 1 && c == 1) { c = r.getChannelSamplesPerPixel(imageIndex, 0).getValue(); } c = Math.max(1, c); return z * c * t; }
private int planeCount() { MetadataRetrieve r = getMetadataRetrieve(); int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getChannelCount(series); String pixelType = r.getPixelsType(series).getValue(); int bytes = FormatTools.getBytesPerPixel(pixelType); if (bytes > 1 && c == 1) { c = r.getChannelSamplesPerPixel(series, 0).getValue(); } return z * c * t; }
int sizeX = meta.getPixelsSizeX(series).getValue().intValue(); int sizeY = meta.getPixelsSizeY(series).getValue().intValue(); int z = meta.getPixelsSizeZ(series).getValue().intValue(); int c = meta.getPixelsSizeC(series).getValue().intValue(); int t = meta.getPixelsSizeT(series).getValue().intValue();
int sizeX = meta.getPixelsSizeX(series).getValue().intValue(); int sizeY = meta.getPixelsSizeY(series).getValue().intValue(); int z = meta.getPixelsSizeZ(series).getValue().intValue(); int c = meta.getPixelsSizeC(series).getValue().intValue(); int t = meta.getPixelsSizeT(series).getValue().intValue();
private int planeCount() { MetadataRetrieve r = getMetadataRetrieve(); int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getChannelCount(series); String pixelType = r.getPixelsType(series).getValue(); int bytes = FormatTools.getBytesPerPixel(pixelType); if (bytes > 1 && c == 1) { c = r.getChannelSamplesPerPixel(series, 0).getValue(); } return z * c * t; }
int nZ = meta.getPixelsSizeZ(series).getValue().intValue(); int nC = meta.getPixelsSizeC(series).getValue().intValue(); int nT = meta.getPixelsSizeT(series).getValue().intValue();
int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getChannelCount(series);
int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getChannelCount(series);
int nZ = meta.getPixelsSizeZ(series).getValue().intValue(); int nC = meta.getPixelsSizeC(series).getValue().intValue(); int nT = meta.getPixelsSizeT(series).getValue().intValue();
int sizeC = r.getPixelsSizeC(series).getValue(); int sizeT = r.getPixelsSizeT(series).getValue(); int sizeZ = r.getPixelsSizeZ(series).getValue();
int sizeX = retrieve.getPixelsSizeX(i).getValue(); int sizeY = retrieve.getPixelsSizeY(i).getValue(); int sizeZ = retrieve.getPixelsSizeZ(i).getValue(); int sizeC = retrieve.getPixelsSizeC(i).getValue(); int sizeT = retrieve.getPixelsSizeT(i).getValue();
int sizeX = retrieve.getPixelsSizeX(i).getValue(); int sizeY = retrieve.getPixelsSizeY(i).getValue(); int sizeZ = retrieve.getPixelsSizeZ(i).getValue(); int sizeC = retrieve.getPixelsSizeC(i).getValue(); int sizeT = retrieve.getPixelsSizeT(i).getValue();
int sizeZ = retrieve.getPixelsSizeZ(0).getValue(); int sizeC = retrieve.getPixelsSizeC(0).getValue(); int sizeT = retrieve.getPixelsSizeT(0).getValue();
int sizeZ = retrieve.getPixelsSizeZ(0).getValue(); int sizeC = retrieve.getPixelsSizeC(0).getValue(); int sizeT = retrieve.getPixelsSizeT(0).getValue();
throw new FormatException("SizeY #" + n + " is null"); if (src.getPixelsSizeZ(n) == null) { throw new FormatException("SizeZ #" + n + " is null");
throw new FormatException("SizeY #" + n + " is null"); if (src.getPixelsSizeZ(n) == null) { throw new FormatException("SizeZ #" + n + " is null");