int sizeC = retrieve.getChannelCount(series); int sizeT = retrieve.getPixelsSizeT(series).getValue(); int sizeZ = retrieve.getPixelsSizeZ(series).getValue();
int sizeC = retrieve.getChannelCount(series); int sizeT = retrieve.getPixelsSizeT(series).getValue(); int sizeZ = retrieve.getPixelsSizeZ(series).getValue();
private int planeCount(final int imageIndex) { final MetadataRetrieve r = getMetadata().getOmeMeta().getRoot(); final int z = Math.max(1, // r.getPixelsSizeZ(imageIndex).getValue().intValue()); final int t = Math.max(1, // r.getPixelsSizeT(imageIndex).getValue().intValue()); int c = r.getChannelCount(imageIndex); final String pixelType = r.getPixelsType(imageIndex).getValue(); final int bytes = FormatTools.getBytesPerPixel(pixelType); if (bytes > 1 && c == 1) { c = r.getChannelSamplesPerPixel(imageIndex, 0).getValue(); } c = Math.max(1, c); return z * c * t; }
private int planeCount() { MetadataRetrieve r = getMetadataRetrieve(); int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getChannelCount(series); String pixelType = r.getPixelsType(series).getValue(); int bytes = FormatTools.getBytesPerPixel(pixelType); if (bytes > 1 && c == 1) { c = r.getChannelSamplesPerPixel(series, 0).getValue(); } return z * c * t; }
int channelCount = retrieve.getChannelCount(series); if (coordinates[1] < channelCount) { String channelName = retrieve.getChannelName(series, coordinates[1]);
private int planeCount() { MetadataRetrieve r = getMetadataRetrieve(); int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getChannelCount(series); String pixelType = r.getPixelsType(series).getValue(); int bytes = FormatTools.getBytesPerPixel(pixelType); if (bytes > 1 && c == 1) { c = r.getChannelSamplesPerPixel(series, 0).getValue(); } return z * c * t; }
FormatTools.getNonPlanarAxisPosition(this, imageIndex, planeIndex, Axes.CHANNEL); if (channelIndex >= 0 && retrieve.getChannelCount(imageIndex) > 0 && channelIndex < retrieve.getChannelCount(imageIndex))
int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getChannelCount(series); int planes = z * c * t;
int z = r.getPixelsSizeZ(series).getValue().intValue(); int t = r.getPixelsSizeT(series).getValue().intValue(); int c = r.getChannelCount(series); int planes = z * c * t;
int sizeC = meta.getChannelCount(series); if (rgbChannels <= sizeC) { sizeC /= rgbChannels;
int sizeC = meta.getChannelCount(series); if (rgbChannels <= sizeC) { sizeC /= rgbChannels;
int sizeC = meta.getChannelCount(series); if (rgbChannels <= sizeC) { sizeC /= rgbChannels;
MetadataRetrieve retrieve = (MetadataRetrieve) store; if (c < retrieve.getChannelCount(reader.getSeries())) { ome.xml.model.primitives.Color metaColor = retrieve.getChannelColor(reader.getSeries(), c);
MetadataRetrieve retrieve = (MetadataRetrieve) store; if (c < retrieve.getChannelCount(reader.getSeries())) { ome.xml.model.primitives.Color metaColor = retrieve.getChannelColor(reader.getSeries(), c);
if (cIndex >= retrieve.getChannelCount(s)) { break;
if (c * rgbChannels >= retrieve.getChannelCount(s)) { break;
int nChannelComponents = retrieve.getChannelCount(i); int samplesPerPixel = retrieve.getChannelSamplesPerPixel(i, 0).getValue();
final PositiveInteger spp = retrieve.getChannelCount(imageIndex) <= 0 ? // null : retrieve.getChannelSamplesPerPixel(imageIndex, 0);
throw new FormatException("Pixels ID #" + n + " is null"); for (int i=0; i<src.getChannelCount(n); i++) { if (src.getChannelID(n, i) == null) { throw new FormatException("Channel ID #" + i + " in Image #" + n +
throw new FormatException("Pixels ID #" + n + " is null"); for (int i=0; i<src.getChannelCount(n); i++) { if (src.getChannelID(n, i) == null) { throw new FormatException("Channel ID #" + i + " in Image #" + n +