private void setSequenceIntern( String seq ) { //don't allow default empty String to be replaced by null. Check size also //to avoid unnecessary DB call for a seq that is too big... if ( seq != null ) { if ( seq.length() > getMaxSequenceSize() ) { throw new IllegalArgumentException( "Sequence too big! Max allowed: " + getMaxSequenceSize() ); } } this.sequence = seq; }
private void setSequenceIntern( String seq ) { //don't allow default empty String to be replaced by null. Check size also //to avoid unnecessary DB call for a seq that is too big... if ( seq != null ) { if ( seq.length() > getMaxSequenceSize() ) { throw new IllegalArgumentException( "Sequence too big! Max allowed: " + getMaxSequenceSize() ); } } this.sequence = seq; }
private void setSequenceIntern( String seq ) { //don't allow default empty String to be replaced by null. Check size also //to avoid unnecessary DB call for a seq that is too big... if ( seq != null ) { if ( seq.length() > getMaxSequenceSize() ) { throw new IllegalArgumentException( "Sequence too big! Max allowed: " + getMaxSequenceSize() ); } } this.sequence = seq; }
if ( sequence.length() <= getMaxSequenceSize() ) { if ( start == 0 ) { seq = sequence; if ( sequence.length() >= start + getMaxSequenceSize() ) { seq = sequence.substring( start, start + getMaxSequenceSize() ); } else { seq = sequence.substring( sequence.length() - getMaxSequenceSize() );
if ( sequence.length() <= getMaxSequenceSize() ) { if ( start == 0 ) { seq = sequence; if ( sequence.length() >= start + getMaxSequenceSize() ) { seq = sequence.substring( Math.max( 0, start - 1 ), Math.max( 0, start - 1 ) + getMaxSequenceSize() ); } else { seq = sequence.substring( Math.max(0, sequence.length() - getMaxSequenceSize()) );
if ( sequence.length() <= getMaxSequenceSize() ) { if ( start == 0 ) { seq = sequence; if ( sequence.length() >= start + getMaxSequenceSize() ) { seq = sequence.substring( Math.max( 0, start - 1 ), Math.max( 0, start - 1 ) + getMaxSequenceSize() ); } else { seq = sequence.substring( Math.max(0, sequence.length() - getMaxSequenceSize()) );