public Range createRangeCTerminal() { Range range = new Range(institution, 0, 0, null); final CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, CvFuzzyType.C_TERMINAL_MI_REF, CvFuzzyType.C_TERMINAL); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
public Range createRangeUndetermined() { Range range = new Range(institution, 0, 0, null); CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, CvFuzzyType.UNDETERMINED_MI_REF, CvFuzzyType.UNDETERMINED); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
public Range createRangeUndetermined() { Range range = new Range(institution, 0, 0, null); CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, CvFuzzyType.UNDETERMINED_MI_REF, CvFuzzyType.UNDETERMINED); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
public Range createRangeCTerminal(int beginFrom, int endFrom, int beginTo, int endTo) { Range range = new Range(institution, beginFrom, endFrom, beginTo, endTo, null); final CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, CvFuzzyType.C_TERMINAL_MI_REF, CvFuzzyType.C_TERMINAL); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
public Range createRangeCTerminal() { Range range = new Range(institution, 0, 0, null); final CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, CvFuzzyType.C_TERMINAL_MI_REF, CvFuzzyType.C_TERMINAL); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
public Range createRangeCTerminal(int beginFrom, int endFrom, int beginTo, int endTo) { Range range = new Range(institution, beginFrom, endFrom, beginTo, endTo, null); final CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, CvFuzzyType.C_TERMINAL_MI_REF, CvFuzzyType.C_TERMINAL); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
int toEnd = intervalEnd[1]; final Range range = new Range(fromStatus, fromStart, fromEnd, toStatus, toStart, toEnd, null); range.prepareSequence(proteinSequence, enforceConsistency);
int toEnd = intervalEnd[1]; final Range range = new Range(fromStatus, fromStart, fromEnd, toStatus, toStart, toEnd, null); range.prepareSequence(proteinSequence, enforceConsistency);
public Range createRange(int beginFrom, int endFrom, int beginTo, int endTo) { if( beginFrom == 0 && endFrom == 0 && beginTo == 0 && endTo == 0 ) { return createRangeUndetermined(); } Range range = new Range(institution, beginFrom, endFrom, beginTo, endTo, null); final CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, CvFuzzyType.RANGE_MI_REF, CvFuzzyType.RANGE); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
public Range createRange(int beginFrom, int endFrom, int beginTo, int endTo) { if( beginFrom == 0 && endFrom == 0 && beginTo == 0 && endTo == 0 ) { return createRangeUndetermined(); } Range range = new Range(institution, beginFrom, endFrom, beginTo, endTo, null); final CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, CvFuzzyType.RANGE_MI_REF, CvFuzzyType.RANGE); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
public Range createRange(int beginFrom, int endFrom, int beginTo, int endTo) { Range range = new Range(institution, beginFrom, endTo, null); range.setFromIntervalStart(beginFrom); range.setFromIntervalEnd(endFrom); range.setToIntervalStart(beginTo); range.setToIntervalEnd(endTo); CvFuzzyType fuzzyType = createCvObject(CvFuzzyType.class, "MI:0339", CvFuzzyType.UNDETERMINED); range.setFromCvFuzzyType(fuzzyType); range.setToCvFuzzyType(fuzzyType); return range; }
Range range = new Range(fromFuzzyType, beginIntervalFrom, beginIntervalTo, toFuzzyType, endIntervalFrom, endIntervalTo, seq); range.setOwner(getInstitution());
protected Range cloneRange(Range range) throws IntactClonerException { if (range == null) { throw new IllegalArgumentException("You must give a non null range"); } Range clone = new Range(); clonerManager.addClone(range, clone); clone.setFromIntervalStart(range.getFromIntervalStart()); clone.setFromIntervalEnd(range.getFromIntervalEnd()); clone.setToIntervalStart(range.getToIntervalStart()); clone.setToIntervalEnd(range.getToIntervalEnd()); clone.setSequence(range.getSequence()); clone.setFullSequence(range.getFullSequence()); clone.setUpStreamSequence(range.getUpStreamSequence()); clone.setDownStreamSequence(range.getDownStreamSequence()); clone.setFromCvFuzzyType(clone(range.getFromCvFuzzyType())); clone.setToCvFuzzyType(clone(range.getToCvFuzzyType())); clone.setFeature(clone(range.getFeature())); return clone; }
protected Range cloneRange(Range range) throws IntactClonerException { if (range == null) { throw new IllegalArgumentException("You must give a non null range"); } Range clone = new Range(); clonerManager.addClone(range, clone); clone.setFromIntervalStart(range.getFromIntervalStart()); clone.setFromIntervalEnd(range.getFromIntervalEnd()); clone.setToIntervalStart(range.getToIntervalStart()); clone.setToIntervalEnd(range.getToIntervalEnd()); clone.setSequence(range.getSequence()); clone.setFullSequence(range.getFullSequence()); clone.setUpStreamSequence(range.getUpStreamSequence()); clone.setDownStreamSequence(range.getDownStreamSequence()); clone.setFromCvFuzzyType(clone(range.getFromCvFuzzyType())); clone.setToCvFuzzyType(clone(range.getToCvFuzzyType())); clone.setFeature(clone(range.getFeature())); return clone; }
Range range = new Range( institution, (int) location.getFromIntervalStart(), (int) location.getFromIntervalEnd(),
Range range = new Range( institution, (int) location.getFromIntervalStart(), (int) location.getFromIntervalEnd(),
Range range = new Range( institution, (int) location.getFromIntervalStart(), (int) location.getFromIntervalEnd(),