public InstitutionConverter() { super(new Institution("Unknown"), Institution.class, Source.class); }
public Institution cloneInstitution(Institution institution) throws IntactClonerException { if (institution == null) return null; if (clonerManager.isAlreadyCloned(institution)) { return (Institution) clonerManager.getClonedObject(institution); } Institution clone = new Institution(); clonerManager.addClone(institution, clone); return clone; }
public Institution createInstitution(String miRef, String shortLabel) { this.cvBuilder = new CvObjectBuilder(); institution = new Institution(shortLabel); InstitutionXref xref = createIdentityXrefPsiMi(institution, miRef); institution.addXref(xref); return institution; }
public static RuntimeConfig getCurrentInstance( IntactSession session ) { RuntimeConfig runtimeConfig = ( RuntimeConfig ) session.getApplicationAttribute( APPLICATION_PARAM_NAME ); if ( runtimeConfig == null ) { runtimeConfig = initRuntime( session, null ); Institution institution = new Institution("testInstitution"); runtimeConfig.setInstitution(institution); } return runtimeConfig; }
public Institution createInstitution(String miRef, String shortLabel) { this.cvBuilder = new CvObjectBuilder(); institution = new Institution(shortLabel); InstitutionXref xref = createIdentityXrefPsiMi(institution, miRef); institution.addXref(xref); return institution; }
public Institution createInstitution(String miRef, String shortLabel) { this.cvBuilder = new CvObjectBuilder(); institution = new Institution(shortLabel); InstitutionXref xref = createIdentityXrefPsiMi(institution, miRef); institution.addXref(xref); return institution; }
public Institution cloneInstitution(Institution institution) throws IntactClonerException { if (institution == null) return null; if (clonerManager.isAlreadyCloned(institution)) { return (Institution) clonerManager.getClonedObject(institution); } Institution clone = new Institution(); clonerManager.addClone(institution, clone); return clone; }
institution = new Institution( institutionLabel );
/** * Rigourous Test :-) */ public void testIsValidArgument() { Institution institution = new Institution("EBI"); BioSource bioSource = new BioSource(institution, "human", "9606"); CvInteractorType cvInteractorType = new CvInteractorType(institution,"protein"); Protein protein = new ProteinImpl(institution, bioSource, "lsm7", cvInteractorType); // This should return true. assertTrue(MethodArgumentValidator.isValidArgument(protein,Protein.class) ); // This should return true as Protein is a sub class of Interactor assertTrue(MethodArgumentValidator.isValidArgument(protein,Interactor.class) ); //This should send an IllegalArgumentException try{ MethodArgumentValidator.isValidArgument(protein,BioSource.class); fail("This should have sent and IllegalArgumentException as protein is not a BioSource"); }catch(IllegalArgumentException e){ assertTrue(true); } //This should send an NullPointerException try{ assertTrue(MethodArgumentValidator.isValidArgument(null,Interactor.class) ); fail("This should have sent and NullPointerException as protein is null"); }catch( NullPointerException e){ assertTrue(true); } }
Institution institution = new Institution(name); institution.setFullName(description);
Institution institution = new Institution(name); institution.setFullName(description);