private void validateChange(TissueOrigin tissueOrigin, TissueOrigin beforeChange) { List<ValidationError> errors = new ArrayList<>(); if (LimsUtils.isStringBlankOrNull(tissueOrigin.getAlias())) { errors.add(new ValidationError("alias", "Alias cannot be blank")); } if (LimsUtils.isStringBlankOrNull(tissueOrigin.getDescription())) { errors.add(new ValidationError("description", "Description cannot be blank")); } if (beforeChange == null || !tissueOrigin.getAlias().equals(beforeChange.getAlias())) { TissueOrigin duplicateAlias = tissueOriginDao.getByAlias(tissueOrigin.getAlias()); if (duplicateAlias != null) { errors.add(new ValidationError("alias", "There is already a Tissue Origin with this alias")); } } if (!errors.isEmpty()) { throw new ValidationException(errors); } }
private String generateTissueAlias(SampleTissue tissue, SampleIdentity identity) { StringBuilder sb = new StringBuilder(); sb.append(identity.getAlias()) .append(SEPARATOR) .append(tissue.getTissueOrigin() == null ? TISSUE_ORIGIN_UNKNOWN : tissue.getTissueOrigin().getAlias()) .append(SEPARATOR) .append(tissue.getTissueType() == null ? TISSUE_TYPE_UNKNOWN : tissue.getTissueType().getAlias()) .append(SEPARATOR) .append(passageNumber(tissue.getPassageNumber())) .append(SEPARATOR) .append(tissue.getTimesReceived()); if (tissue.getTubeNumber() != null) { sb.append(DASH) .append(tissue.getTubeNumber()); } return sb.toString(); }
@Override public ValidationResult validateDeletion(TissueOrigin object) { ValidationResult result = new ValidationResult(); long usage = tissueOriginDao.getUsage(object); if (usage > 0L) { result.addError(new ValidationError("Tissue Origin '" + object.getAlias() + "' is used by " + usage + " samples")); } return result; }
@Override public void update(TissueOrigin tissueOrigin) throws IOException { authorizationManager.throwIfNonAdmin(); TissueOrigin managed = get(tissueOrigin.getId()); validateChange(tissueOrigin, managed); managed.setAlias(tissueOrigin.getAlias()); managed.setDescription(tissueOrigin.getDescription()); setChangeDetails(managed); tissueOriginDao.update(managed); }
public static TissueOriginDto asDto(@Nonnull TissueOrigin from) { TissueOriginDto dto = new TissueOriginDto(); dto.setId(from.getId()); dto.setAlias(from.getAlias()); dto.setDescription(from.getDescription()); dto.setLabel(from.getItemLabel()); dto.setCreatedById(from.getCreatedBy().getUserId()); dto.setCreationDate(formatDateTime(from.getCreationDate())); dto.setUpdatedById(from.getUpdatedBy().getUserId()); dto.setLastUpdated(formatDateTime(from.getLastUpdated())); return dto; }