psiIndex.addFeature( feature.getId(), isr );
psiIndex.addFeature( feature.getId(), isr );
jParticipant.setParticipantFeatureRef( mInferredInteractionParticipant.getFeature().getId() );
jParticipant.setParticipantFeatureRef( mInferredInteractionParticipant.getFeature().getId() );
private <T extends EntityFeature> T getFeature(Class<T> featureClass, Feature psiFeature) String entityFeatureUri = genUri(featureClass, psiFeature.getId()); T entityFeature = (T) bpModel.addNew(featureClass, entityFeatureUri);
jFeature.setId( mFeature.getId() );
jFeature.setId( mFeature.getId() );
throw new PsimiXmlReaderException( "The feature ("+ feature.getId() +") defined in the participant (id="+ participant.getId() +") of the interaction (id="+ parentInteraction.getId()+") refers to experiment ref "+ eref.getRef() +"," + "however, this experiment isn't defined in this interaction." +