How to use

transform

method

in

org.phenotips.obo2solr.SolrUpdateGenerator

public Map<String, TermData> transform(String ontologyUrl, Map<String, Double> fieldSelection)
{
  URL url;
  try {
    url = new URL(ontologyUrl);
  } catch (MalformedURLException ex) {
    return null;
  }
  return transform(url, fieldSelection);
}

public Map<String, TermData> transform(String ontologyUrl, Map<String, Double> fieldSelection)
{
  URL url;
  try {
    url = new URL(ontologyUrl);
  } catch (MalformedURLException ex) {
    return null;
  }
  return transform(url, fieldSelection);
}

/**
 * Load vocabulary data from a provided source url.
 *
 * @param sourceUrl the address from where to get the vocabulary source file
 * @return vocabulary data, if exists
 */
protected Map<String, TermData> load(final String sourceUrl)
{
  SolrUpdateGenerator generator = new SolrUpdateGenerator();
  Map<String, Double> fieldSelection = new HashMap<>();
  return generator.transform(sourceUrl, fieldSelection);
}

Map<String, TermData> data = generator.transform(realOntologyUrl, fieldSelection);
if (data == null) {
  return 2;