- <init>
Create a perception method for the provided container, graph representation and
bond map.
- checkSymmetry
- elementType
Obtain the type of stereo element support for atom at index v. Supported
elements types are: * Type
- atomicNumber
Safely obtain the atomic number of an atom. If the atom has undefined atomic
number and is not a pse
- charge
Safely obtain the formal charge on an atom. If the atom had undefined formal
charge it is considered
- createElements
Create org.openscience.cdk.stereo.Stereocenters.StereoElementinstance for atoms
which support stereo
- getRingDegree
- inThreeMemberRing
Check if the atom at index v is a member of a small ring (n=3). This is the only
time a 3 valent nit
- indexNeighbor
Index the atom by element to a number between 0-5. This allows us to quickly
count up neighbors we n
- isFusedBond
Detects if a bond is a fused-ring bond (e.g. napthalene). A bond is a ring
fusion if deleting it cre
- isStereocenter
Is the atom be a stereocenter (i.e. True or Para).
- isSymmetryChecked