- <init>
- parse
Create a SolrQuery object from Query and QueryOptions.
- addFileFilters
Add Solr query filters for files, QUAL and FILTER.
- addSampleFilters
Add Solr query filter for genotypes.
- buildConsequenceTypeOrAnd
Build an OR/AND-condition with all consequence types from the input list. It
uses the VariantDBAdapt
- buildGeneAndConsequenceType
Build the condition: genes AND cts.
- buildXrefOrGeneOrRegion
Build an OR-condition with all xrefs, genes and regions.
- buildXrefOrRegionAndConsequenceType
Build the condition: (xrefs OR regions) AND cts.
- classifyIds
Insert the IDs for this key in the query into the xref or gene list depending on
they are or not gen
- getChromosomeMap
- getMafOrRefFrequency
- getRange
Build Solr query range, e.g.: query range [0 TO 23}.