case "gwas": if (variant.getAnnotation().getVariantTraitAssociation() != null && variant.getAnnotation().getVariantTraitAssociation().getGwas() != null) { stringBuilder.append(variant.getAnnotation().getVariantTraitAssociation().getGwas().stream() .map(Gwas::getTraits).flatMap(Collection::stream) .collect(Collectors.joining(",")));
case "gwas": if (variant.getAnnotation().getVariantTraitAssociation() != null && variant.getAnnotation().getVariantTraitAssociation().getGwas() != null) { stringBuilder.append(variant.getAnnotation().getVariantTraitAssociation().getGwas().stream() .map(Gwas::getTraits).flatMap(Collection::stream) .collect(Collectors.joining(",")));
generateClinicalDBList(variantAnnotation.getVariantTraitAssociation().getGwas())); putNotNull(clinicalDocument, CLINICAL_CLINVAR_FIELD, generateClinicalDBList(variantAnnotation.getVariantTraitAssociation().getClinvar()));