OWLOntologyManager manager = ontology.getOWLOntologyManager(); OWLDataFactory factory = manager.getOWLDataFactory(); Set<OWLAnnotationProperty> headerProperties = getProperties(factory, TAG_ONTOLOGY, TAG_FORMAT_VERSION, TAG_DATE, TAG_DEFAULT_NAMESPACE, TAG_SAVED_BY, TAG_AUTO_GENERATED_BY); checkOntologyAnnotations(headerProperties, ontology, reporter, handler, manager); Set<OWLAnnotationProperty> properties = getProperties(factory, TAG_IS_ANONYMOUS, TAG_NAME, TAG_NAMESPACE, TAG_DEF, TAG_COMMENT, TAG_DOMAIN, TAG_RANGE, TAG_IS_ANTI_SYMMETRIC, TAG_IS_CYCLIC,
OWLOntologyManager manager = ontology.getOWLOntologyManager(); OWLDataFactory factory = manager.getOWLDataFactory(); Set<OWLAnnotationProperty> headerProperties = getProperties(factory, TAG_ONTOLOGY, TAG_FORMAT_VERSION, TAG_DATE, TAG_DEFAULT_NAMESPACE, TAG_SAVED_BY, TAG_AUTO_GENERATED_BY); checkOntologyAnnotations(headerProperties, ontology, reporter, handler, manager); Set<OWLAnnotationProperty> properties = getProperties(factory, TAG_IS_ANONYMOUS, TAG_NAME, TAG_NAMESPACE, TAG_DEF, TAG_COMMENT, TAG_DOMAIN, TAG_RANGE, TAG_IS_ANTI_SYMMETRIC, TAG_IS_CYCLIC,
OWLOntologyManager manager = ontology.getOWLOntologyManager(); OWLDataFactory factory = manager.getOWLDataFactory(); Set<OWLAnnotationProperty> headerProperties = getProperties(factory, TAG_ONTOLOGY, TAG_FORMAT_VERSION, TAG_DATE, TAG_DEFAULT_NAMESPACE, TAG_SAVED_BY, TAG_AUTO_GENERATED_BY); checkOntologyAnnotations(headerProperties, ontology, reporter, handler, manager); Set<OWLAnnotationProperty> properties = getProperties(factory, TAG_IS_ANONYMOUS, TAG_NAME, TAG_NAMESPACE, TAG_DEF, TAG_COMMENT, TAG_DOMAIN, TAG_RANGE, TAG_IS_ANTI_SYMMETRIC, TAG_IS_CYCLIC,
OWLOntologyManager manager = ontology.getOWLOntologyManager(); OWLDataFactory factory = manager.getOWLDataFactory(); Set<OWLAnnotationProperty> headerProperties = getProperties(factory, TAG_ONTOLOGY, TAG_FORMAT_VERSION, TAG_DATE, TAG_DEFAULT_NAMESPACE, TAG_SAVED_BY, TAG_AUTO_GENERATED_BY); checkOntologyAnnotations(headerProperties, ontology, reporter, handler, manager); Set<OWLAnnotationProperty> properties = getProperties(factory, TAG_IS_ANONYMOUS, TAG_NAME, TAG_NAMESPACE, TAG_DEF, TAG_COMMENT, TAG_DOMAIN, TAG_RANGE, TAG_IS_ANTI_SYMMETRIC, TAG_IS_CYCLIC,
final OWLDataFactory factory = manager.getOWLDataFactory(); Set<OWLAnnotationProperty> headerProperties = getProperties(factory, OboFormatTag.TAG_ONTOLOGY, OboFormatTag.TAG_FORMAT_VERSION, Set<OWLAnnotationProperty> properties = getProperties(factory, OboFormatTag.TAG_IS_ANONYMOUS, OboFormatTag.TAG_NAME,