protected Set<InputWorkflowPort> parseInputPorts( AnnotatedGranularDepthPorts originalPorts) throws ReaderException { Set<InputWorkflowPort> createdPorts = new HashSet<>(); for (AnnotatedGranularDepthPort originalPort : originalPorts.getPort()) { InputWorkflowPort newPort = new InputWorkflowPort(parserState.get() .getCurrentWorkflow(), originalPort.getName()); newPort.setDepth(originalPort.getDepth().intValue()); if (!originalPort.getGranularDepth() .equals(originalPort.getDepth())) { String message = "Specific input port granular depth not " + "supported in scufl2, port " + originalPort.getName() + " has depth " + originalPort.getDepth() + " and granular depth " + originalPort.getGranularDepth(); if (isStrict()) throw new ReaderException(message); logger.warning(message); } parseAnnotations(newPort, originalPort.getAnnotations()); createdPorts.add(newPort); } return createdPorts; }
protected void parseInputWorkflowPort( org.apache.taverna.scufl2.xml.InputWorkflowPort original) { org.apache.taverna.scufl2.api.port.InputWorkflowPort port = new org.apache.taverna.scufl2.api.port.InputWorkflowPort(); port.setName(original.getName()); if (original.getPortDepth() != null) port.setDepth(original.getPortDepth().getValue()); port.setParent(getParserState().getCurrent(Workflow.class)); mapBean(getParserState().getCurrentBase().resolve(original.getAbout()), port); }
@Test public void testDataLinkInheritanceFromInputWorkflowPorts() { WorkflowBundle wb = new WorkflowBundle(); Workflow w = new Workflow(); wb.setMainWorkflow(w); InputWorkflowPort a = new InputWorkflowPort(w, "a"); a.setDepth(0); InputWorkflowPort b = new InputWorkflowPort(w, "b"); b.setDepth(7); OutputWorkflowPort outA = new OutputWorkflowPort(w, "outA"); OutputWorkflowPort outB = new OutputWorkflowPort(w, "outB"); DataLink aLink = new DataLink(w, a, outA); DataLink bLink = new DataLink(w, b, outB); StructuralValidator sv = new StructuralValidator(); ReportStructuralValidationListener l = new ReportStructuralValidationListener(); sv.checkStructure(wb, l); ValidatorState vs = sv.getValidatorState(); assertEquals(0, l.getIncompleteWorkflows().size()); assertEquals(Integer.valueOf(0), vs.getDataLinkResolvedDepth(aLink)); assertEquals(Integer.valueOf(7), vs.getDataLinkResolvedDepth(bLink)); assertEquals(Integer.valueOf(0), vs.getPortResolvedDepth(outA)); assertEquals(Integer.valueOf(7), vs.getPortResolvedDepth(outB)); }
@Test public void testMergingToOutputWorkflowPort() { WorkflowBundle wb = new WorkflowBundle(); Workflow w = new Workflow(); wb.setMainWorkflow(w); InputWorkflowPort a = new InputWorkflowPort(w, "a"); a.setDepth(0); InputWorkflowPort b = new InputWorkflowPort(w, "b"); b.setDepth(7); OutputWorkflowPort outA = new OutputWorkflowPort(w, "outA"); OutputWorkflowPort outB = new OutputWorkflowPort(w, "outB"); DataLink aLink = new DataLink(w, a, outA); aLink.setMergePosition(0); DataLink bLink = new DataLink(w, b, outA); bLink.setMergePosition(1); DataLink aLink2 = new DataLink(w, a, outB); aLink2.setMergePosition(1); DataLink bLink2 = new DataLink(w, b, outB); bLink2.setMergePosition(0); StructuralValidator sv = new StructuralValidator(); ReportStructuralValidationListener l = new ReportStructuralValidationListener(); sv.checkStructure(wb, l); ValidatorState vs = sv.getValidatorState(); assertEquals(0, l.getIncompleteWorkflows().size()); assertEquals(Integer.valueOf(0), vs.getDataLinkResolvedDepth(aLink)); assertEquals(Integer.valueOf(7), vs.getDataLinkResolvedDepth(bLink)); assertEquals(Integer.valueOf(1), vs.getPortResolvedDepth(outA)); assertEquals(Integer.valueOf(8), vs.getPortResolvedDepth(outB)); }
@Test public void testSimpleIteration() { WorkflowBundle wb = new WorkflowBundle(); Workflow w = new Workflow(); wb.setMainWorkflow(w); InputWorkflowPort a = new InputWorkflowPort(w, "a"); a.setDepth(1); Processor p = new Processor(w, "p"); InputProcessorPort ipp = new InputProcessorPort(p, "in"); ipp.setDepth(0); OutputProcessorPort opp = new OutputProcessorPort(p, "out"); opp.setDepth(3); DataLink inLink = new DataLink(w, a, ipp); IterationStrategyStack iss = new IterationStrategyStack(p); CrossProduct cp = new CrossProduct(); iss.add(cp); PortNode portNode = new PortNode(cp, ipp); portNode.setDesiredDepth(0); StructuralValidator sv = new StructuralValidator(); ReportStructuralValidationListener l = new ReportStructuralValidationListener(); sv.checkStructure(wb, l); ValidatorState vs = sv.getValidatorState(); assertEquals(0, l.getIncompleteWorkflows().size()); assertEquals(Integer.valueOf(1), vs.getPortResolvedDepth(a)); assertEquals(Integer.valueOf(1), vs.getDataLinkResolvedDepth(inLink)); assertEquals(Integer.valueOf(1), vs.getPortResolvedDepth(ipp)); assertEquals(Integer.valueOf(4), vs.getPortResolvedDepth(opp)); }
public Workflow makeMainWorkflow() { workflow = new Workflow(); workflow.setName("HelloWorld"); // NOTE: setWorkflowIdentifier should only be called when loading a // workflow // which already has an ID workflow.setIdentifier(URI .create("http://ns.taverna.org.uk/2010/workflow/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/")); InputWorkflowPort yourName = new InputWorkflowPort(workflow, "yourName"); yourName.setDepth(0); OutputWorkflowPort results = new OutputWorkflowPort(workflow, "results"); // Not needed: // workflow.getInputPorts().add(yourName); // workflow.getOutputPorts().add(results); workflow.getProcessors().add(makeProcessor()); workflow.getProcessors().add(makeProcessor2()); // Make links DataLink directLink = new DataLink(workflow, yourName, results); directLink.setMergePosition(1); DataLink greetingLink = new DataLink(workflow, processorGreeting, results); greetingLink.setMergePosition(0); nameLink = new DataLink(workflow, yourName, processorName); condition = new BlockingControlLink(processor, wait4me); return workflow; }