private void parseWorkflowInput(SourceType st) { Workflow currentWorkflow = parserState.get().getCurrentWorkflow(); InputWorkflowPort iwp = new InputWorkflowPort(currentWorkflow, sanitiseName(st.getName())); parserState.get().addMapping(st, iwp); // Cannot do anything about the depths }
@Test public void ignoringNull() throws Exception { ports.add(new InputWorkflowPort(null, "p3")); ports.add(new InputWorkflowPort(null, "p1")); ports.add(new InputWorkflowPort(wf, "p2")); Collections.sort(ports); assertNamesEqual(ports, "p1", "p2", "p3"); }
@Test public void orderedByName() throws Exception { ports.add(new InputWorkflowPort(wf, "p3")); ports.add(new InputWorkflowPort(wf, "p1")); ports.add(new InputWorkflowPort(wf, "p2")); Collections.sort(ports); assertNamesEqual(ports, "p1", "p2", "p3"); }
@Test public void orderedByClassName() throws Exception { ports.add(new InputWorkflowPort(wf, "p3")); ports.add(new OutputWorkflowPort(wf, "p1")); ports.add(new InputWorkflowPort(wf, "p2")); Collections.sort(ports); assertNamesEqual(ports, "p2", "p3", "p1"); }
protected Set<InputWorkflowPort> parseInputPorts( AnnotatedGranularDepthPorts originalPorts) throws ReaderException { Set<InputWorkflowPort> createdPorts = new HashSet<>(); for (AnnotatedGranularDepthPort originalPort : originalPorts.getPort()) { InputWorkflowPort newPort = new InputWorkflowPort(parserState.get() .getCurrentWorkflow(), originalPort.getName()); newPort.setDepth(originalPort.getDepth().intValue()); if (!originalPort.getGranularDepth() .equals(originalPort.getDepth())) { String message = "Specific input port granular depth not " + "supported in scufl2, port " + originalPort.getName() + " has depth " + originalPort.getDepth() + " and granular depth " + originalPort.getGranularDepth(); if (isStrict()) throw new ReaderException(message); logger.warning(message); } parseAnnotations(newPort, originalPort.getAnnotations()); createdPorts.add(newPort); } return createdPorts; }
private void parsePort(Scanner scanner, String next) throws ReaderException { boolean in = next.equals("In"); String portName = parseName(scanner); switch (level) { case Workflow: if (in) new InputWorkflowPort(workflow, portName); else new OutputWorkflowPort(workflow, portName); break; case Processor: if (in) new InputProcessorPort(processor, portName); else new OutputProcessorPort(processor, portName); break; case Activity: if (in) new InputActivityPort(activity, portName); else new OutputActivityPort(activity, portName); break; default: throw new ReaderException("Unexpected " + next + " at level " + level); } }
@SuppressWarnings({ "unchecked", "unused" }) @Test public void expectedOrder() throws Exception { Workflow wf = new Workflow(); wf.setName("wf"); InputWorkflowPort a = new InputWorkflowPort(wf, "a"); InputWorkflowPort b = new InputWorkflowPort(wf, "b"); InputWorkflowPort c = new InputWorkflowPort(wf, "c"); OutputWorkflowPort x = new OutputWorkflowPort(wf, "x"); OutputWorkflowPort y = new OutputWorkflowPort(wf, "y"); OutputWorkflowPort z = new OutputWorkflowPort(wf, "z"); DataLink c_x = new DataLink(wf, c, x); DataLink b_x = new DataLink(wf, b, x); DataLink b_z = new DataLink(wf, b, z); DataLink a_z = new DataLink(wf, a, z); DataLink a_x = new DataLink(wf, a, x); ArrayList<DataLink> links = new ArrayList<DataLink>(wf.getDataLinks()); assertEquals(Arrays.asList(a_x, a_z, b_x, b_z, c_x), links); Collections.shuffle(links); Collections.sort(links); assertEquals(Arrays.asList(a_x, a_z, b_x, b_z, c_x), links); }
protected void parseInputWorkflowPort( org.apache.taverna.scufl2.xml.InputWorkflowPort original) { org.apache.taverna.scufl2.api.port.InputWorkflowPort port = new org.apache.taverna.scufl2.api.port.InputWorkflowPort(); port.setName(original.getName()); if (original.getPortDepth() != null) port.setDepth(original.getPortDepth().getValue()); port.setParent(getParserState().getCurrent(Workflow.class)); mapBean(getParserState().getCurrentBase().resolve(original.getAbout()), port); }
@Test public void testCorrectnessOfMissingSendsTo() { DataLink dataLink = new DataLink(); InputWorkflowPort iwp = new InputWorkflowPort(); dataLink.setReceivesFrom(iwp); CorrectnessValidator cv = new CorrectnessValidator(); ReportCorrectnessValidationListener rcvl = new ReportCorrectnessValidationListener(); cv.checkCorrectness(dataLink, false, rcvl); Set<NullFieldProblem> nullFieldProblems = rcvl.getNullFieldProblems(); assertEquals(0, nullFieldProblems.size()); // only done when completeness check }
InputWorkflowPort a = new InputWorkflowPort(wf, "a"); InputWorkflowPort b = new InputWorkflowPort(wf, "b"); InputWorkflowPort c = new InputWorkflowPort(wf, "c");
@Test public void testCompletenessOfMissingSendsTo() { DataLink dataLink = new DataLink(); InputWorkflowPort iwp = new InputWorkflowPort(); dataLink.setReceivesFrom(iwp); CorrectnessValidator cv = new CorrectnessValidator(); ReportCorrectnessValidationListener rcvl = new ReportCorrectnessValidationListener(); cv.checkCorrectness(dataLink, true, rcvl); Set<NullFieldProblem> nullFieldProblems = rcvl.getNullFieldProblems(); assertFalse(nullFieldProblems.isEmpty()); // only done when completeness check boolean fieldProblem = false; for (NullFieldProblem nlp : nullFieldProblems) { if (nlp.getBean().equals(dataLink) && nlp.getFieldName().equals("sendsTo")) { fieldProblem = true; } } assertTrue(fieldProblem); }
@Test public void testDataLinkInheritanceFromInputWorkflowPorts() { WorkflowBundle wb = new WorkflowBundle(); Workflow w = new Workflow(); wb.setMainWorkflow(w); InputWorkflowPort a = new InputWorkflowPort(w, "a"); a.setDepth(0); InputWorkflowPort b = new InputWorkflowPort(w, "b"); b.setDepth(7); OutputWorkflowPort outA = new OutputWorkflowPort(w, "outA"); OutputWorkflowPort outB = new OutputWorkflowPort(w, "outB"); DataLink aLink = new DataLink(w, a, outA); DataLink bLink = new DataLink(w, b, outB); StructuralValidator sv = new StructuralValidator(); ReportStructuralValidationListener l = new ReportStructuralValidationListener(); sv.checkStructure(wb, l); ValidatorState vs = sv.getValidatorState(); assertEquals(0, l.getIncompleteWorkflows().size()); assertEquals(Integer.valueOf(0), vs.getDataLinkResolvedDepth(aLink)); assertEquals(Integer.valueOf(7), vs.getDataLinkResolvedDepth(bLink)); assertEquals(Integer.valueOf(0), vs.getPortResolvedDepth(outA)); assertEquals(Integer.valueOf(7), vs.getPortResolvedDepth(outB)); }
dataLink.setParent(w); InputWorkflowPort iwp = new InputWorkflowPort(); iwp.setParent(w);
dataLink.setParent(w); InputWorkflowPort iwp = new InputWorkflowPort(); iwp.setParent(otherWorkflow);
dataLink.setParent(w); InputWorkflowPort iwp = new InputWorkflowPort(); iwp.setParent(w);
@Test public void testMergingToOutputWorkflowPort() { WorkflowBundle wb = new WorkflowBundle(); Workflow w = new Workflow(); wb.setMainWorkflow(w); InputWorkflowPort a = new InputWorkflowPort(w, "a"); a.setDepth(0); InputWorkflowPort b = new InputWorkflowPort(w, "b"); b.setDepth(7); OutputWorkflowPort outA = new OutputWorkflowPort(w, "outA"); OutputWorkflowPort outB = new OutputWorkflowPort(w, "outB"); DataLink aLink = new DataLink(w, a, outA); aLink.setMergePosition(0); DataLink bLink = new DataLink(w, b, outA); bLink.setMergePosition(1); DataLink aLink2 = new DataLink(w, a, outB); aLink2.setMergePosition(1); DataLink bLink2 = new DataLink(w, b, outB); bLink2.setMergePosition(0); StructuralValidator sv = new StructuralValidator(); ReportStructuralValidationListener l = new ReportStructuralValidationListener(); sv.checkStructure(wb, l); ValidatorState vs = sv.getValidatorState(); assertEquals(0, l.getIncompleteWorkflows().size()); assertEquals(Integer.valueOf(0), vs.getDataLinkResolvedDepth(aLink)); assertEquals(Integer.valueOf(7), vs.getDataLinkResolvedDepth(bLink)); assertEquals(Integer.valueOf(1), vs.getPortResolvedDepth(outA)); assertEquals(Integer.valueOf(8), vs.getPortResolvedDepth(outB)); }
@Test public void testCorrectnessOfMergePositionSpecifiedCorrectly() { Workflow w = new Workflow(); DataLink dataLink = new DataLink(); dataLink.setParent(w); InputWorkflowPort iwp = new InputWorkflowPort(); iwp.setParent(w); OutputWorkflowPort owp = new OutputWorkflowPort(); owp.setParent(w); dataLink.setReceivesFrom(iwp); dataLink.setSendsTo(owp); Integer mergePosition = Integer.valueOf(3); dataLink.setMergePosition(mergePosition); CorrectnessValidator cv = new CorrectnessValidator(); ReportCorrectnessValidationListener rcvl = new ReportCorrectnessValidationListener(); cv.checkCorrectness(dataLink, false, rcvl); Set<NegativeValueProblem> negativeValueProblems = rcvl.getNegativeValueProblems(); assertEquals(Collections.EMPTY_SET, negativeValueProblems); }
@Test public void testSimpleIteration() { WorkflowBundle wb = new WorkflowBundle(); Workflow w = new Workflow(); wb.setMainWorkflow(w); InputWorkflowPort a = new InputWorkflowPort(w, "a"); a.setDepth(1); Processor p = new Processor(w, "p"); InputProcessorPort ipp = new InputProcessorPort(p, "in"); ipp.setDepth(0); OutputProcessorPort opp = new OutputProcessorPort(p, "out"); opp.setDepth(3); DataLink inLink = new DataLink(w, a, ipp); IterationStrategyStack iss = new IterationStrategyStack(p); CrossProduct cp = new CrossProduct(); iss.add(cp); PortNode portNode = new PortNode(cp, ipp); portNode.setDesiredDepth(0); StructuralValidator sv = new StructuralValidator(); ReportStructuralValidationListener l = new ReportStructuralValidationListener(); sv.checkStructure(wb, l); ValidatorState vs = sv.getValidatorState(); assertEquals(0, l.getIncompleteWorkflows().size()); assertEquals(Integer.valueOf(1), vs.getPortResolvedDepth(a)); assertEquals(Integer.valueOf(1), vs.getDataLinkResolvedDepth(inLink)); assertEquals(Integer.valueOf(1), vs.getPortResolvedDepth(ipp)); assertEquals(Integer.valueOf(4), vs.getPortResolvedDepth(opp)); }
public Workflow makeMainWorkflow() { workflow = new Workflow(); workflow.setName("HelloWorld"); // NOTE: setWorkflowIdentifier should only be called when loading a // workflow // which already has an ID workflow.setIdentifier(URI .create("http://ns.taverna.org.uk/2010/workflow/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/")); InputWorkflowPort yourName = new InputWorkflowPort(workflow, "yourName"); yourName.setDepth(0); OutputWorkflowPort results = new OutputWorkflowPort(workflow, "results"); // Not needed: // workflow.getInputPorts().add(yourName); // workflow.getOutputPorts().add(results); workflow.getProcessors().add(makeProcessor()); workflow.getProcessors().add(makeProcessor2()); // Make links DataLink directLink = new DataLink(workflow, yourName, results); directLink.setMergePosition(1); DataLink greetingLink = new DataLink(workflow, processorGreeting, results); greetingLink.setMergePosition(0); nameLink = new DataLink(workflow, yourName, processorName); condition = new BlockingControlLink(processor, wait4me); return workflow; }
@Test public void testInScopePorts() { Workflow w = new Workflow(); DataLink dataLink = new DataLink(); dataLink.setParent(w); InputWorkflowPort iwp = new InputWorkflowPort(); iwp.setParent(w); OutputWorkflowPort owp = new OutputWorkflowPort(); owp.setParent(w); dataLink.setReceivesFrom(iwp); dataLink.setSendsTo(owp); CorrectnessValidator cv = new CorrectnessValidator(); ReportCorrectnessValidationListener rcvl = new ReportCorrectnessValidationListener(); cv.checkCorrectness(dataLink, true, rcvl); Set<OutOfScopeValueProblem> outOfScopeValueProblems = rcvl.getOutOfScopeValueProblems(); assertEquals(Collections.EMPTY_SET, outOfScopeValueProblems); }