public void setExperimentDescription(String description, int experimentIndex) { // Parents: {u'OME': None} // Description is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); o1.setDescription(description); }
public void setExperimentDescription(String description, int experimentIndex) { // Parents: {u'OME': None} // Description is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); o1.setDescription(description); }
public void setExperimentType(ExperimentType type, int experimentIndex) { // Parents: {u'OME': None} // Type is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); o1.setType(type); }
public void setExperimentType(ExperimentType type, int experimentIndex) { // Parents: {u'OME': None} // Type is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); o1.setType(type); }
public void setExperimentID(String id, int experimentIndex) { // Parents: {u'OME': None} // ID is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); model.addModelObject(id, o1); o1.setID(id); }
public void setExperimentID(String id, int experimentIndex) { // Parents: {u'OME': None} // ID is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); model.addModelObject(id, o1); o1.setID(id); }
ome.addExperiment(exp); image.linkExperiment(exp); image.linkInstrument(instrument);
public void setMicrobeamManipulationDescription(String description, int experimentIndex, int microbeamManipulationIndex) { // Parents: {u'Experiment': {u'OME': None}} // Description is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); o2.setDescription(description); }
public void setMicrobeamManipulationType(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex) { // Parents: {u'Experiment': {u'OME': None}} // Type is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); o2.setType(type); }
public void setMicrobeamManipulationType(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex) { // Parents: {u'Experiment': {u'OME': None}} // Type is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); o2.setType(type); }
public void setMicrobeamManipulationDescription(String description, int experimentIndex, int microbeamManipulationIndex) { // Parents: {u'Experiment': {u'OME': None}} // Description is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); o2.setDescription(description); }
public void setMicrobeamManipulationID(String id, int experimentIndex, int microbeamManipulationIndex) { // Parents: {u'Experiment': {u'OME': None}} // ID is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); model.addModelObject(id, o2); o2.setID(id); }
public void setMicrobeamManipulationID(String id, int experimentIndex, int microbeamManipulationIndex) { // Parents: {u'Experiment': {u'OME': None}} // ID is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); model.addModelObject(id, o2); o2.setID(id); }
/** * Creates an image with acquisition data. * * @return See above. */ public OME createImageWithAcquisitionData() { populateInstrument(); Image image = createImage(0, true); ObjectiveSettings settings = createObjectiveSettings(0); image.setObjectiveSettings(settings); //Add microbeam Experiment exp = createExperiment(0); ome.addExperiment(exp); MicrobeamManipulation mm = createMicrobeamManipulation(0); exp.addMicrobeamManipulation(mm); image.linkExperiment(exp); image.linkInstrument(instrument); image.linkMicrobeamManipulation(mm); ome.addImage(image); return ome; }
public void setMicrobeamManipulationLightSourceSettingsWavelength(Length wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // Wavelength is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); if (o2.sizeOfLightSourceSettingsList() == lightSourceSettingsIndex) { o2.addLightSourceSettings(new LightSourceSettings()); } LightSourceSettings o3 = o2.getLightSourceSettings(lightSourceSettingsIndex); o3.setWavelength(wavelength); }
public void setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // Attenuation is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); if (o2.sizeOfLightSourceSettingsList() == lightSourceSettingsIndex) { o2.addLightSourceSettings(new LightSourceSettings()); } LightSourceSettings o3 = o2.getLightSourceSettings(lightSourceSettingsIndex); o3.setAttenuation(attenuation); }
public void setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // Attenuation is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); if (o2.sizeOfLightSourceSettingsList() == lightSourceSettingsIndex) { o2.addLightSourceSettings(new LightSourceSettings()); } LightSourceSettings o3 = o2.getLightSourceSettings(lightSourceSettingsIndex); o3.setAttenuation(attenuation); }
public void setMicrobeamManipulationLightSourceSettingsWavelength(Length wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // Wavelength is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); if (o2.sizeOfLightSourceSettingsList() == lightSourceSettingsIndex) { o2.addLightSourceSettings(new LightSourceSettings()); } LightSourceSettings o3 = o2.getLightSourceSettings(lightSourceSettingsIndex); o3.setWavelength(wavelength); }
public void setMicrobeamManipulationLightSourceSettingsID(String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // ID is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); if (o2.sizeOfLightSourceSettingsList() == lightSourceSettingsIndex) { o2.addLightSourceSettings(new LightSourceSettings()); } LightSourceSettings o3 = o2.getLightSourceSettings(lightSourceSettingsIndex); model.addModelObject(id, o3); o3.setID(id); }
public void setMicrobeamManipulationLightSourceSettingsID(String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}, u'MicrobeamManipulation': {u'Experiment': {u'OME': None}}} // ID is not a reference OME o0 = root; if (o0.sizeOfExperimentList() == experimentIndex) { o0.addExperiment(new Experiment()); } Experiment o1 = o0.getExperiment(experimentIndex); if (o1.sizeOfMicrobeamManipulationList() == microbeamManipulationIndex) { o1.addMicrobeamManipulation(new MicrobeamManipulation()); } MicrobeamManipulation o2 = o1.getMicrobeamManipulation(microbeamManipulationIndex); if (o2.sizeOfLightSourceSettingsList() == lightSourceSettingsIndex) { o2.addLightSourceSettings(new LightSourceSettings()); } LightSourceSettings o3 = o2.getLightSourceSettings(lightSourceSettingsIndex); model.addModelObject(id, o3); o3.setID(id); }