public void setImageName(String name, int imageIndex) { // Parents: {u'OME': None} // Name is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); o1.setName(name); }
public void setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex) { // Parents: {u'OME': None} // AcquisitionDate is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); o1.setAcquisitionDate(acquisitionDate); }
public void setPlateColumnNamingConvention(NamingConvention columnNamingConvention, int plateIndex) { // Parents: {u'OME': None} // ColumnNamingConvention is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); o1.setColumnNamingConvention(columnNamingConvention); }
public void setLightPathDichroicRef(String dichroic, int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // DichroicRef is reference and occurs more than once DichroicRef dichroic_reference = new DichroicRef(); dichroic_reference.setID(dichroic); model.addReference( root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath(), dichroic_reference); }
public String getLightPathEmissionFilterRef(int imageIndex, int channelIndex, int emissionFilterRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // EmissionFilterRef is reference and occurs more than once return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().getLinkedEmissionFilter(emissionFilterRefIndex).getID(); }
public String getLightPathExcitationFilterRef(int imageIndex, int channelIndex, int excitationFilterRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // ExcitationFilterRef is reference and occurs more than once return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().getLinkedExcitationFilter(excitationFilterRefIndex).getID(); }
public void setLightPathEmissionFilterRef(String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // EmissionFilterRef is reference and occurs more than once EmissionFilterRef emissionFilterLinks_reference = new EmissionFilterRef(); emissionFilterLinks_reference.setID(emissionFilter); model.addReference( root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath(), emissionFilterLinks_reference); }
public void setLightPathAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath(), annotationLinks_reference); }
public String getLightPathAnnotationRef(int imageIndex, int channelIndex, int annotationRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // AnnotationRef is reference and occurs more than once return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().getLinkedAnnotation(annotationRefIndex).getID(); }
public String getLightPathDichroicRef(int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // DichroicRef is reference and occurs only once return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().getLinkedDichroic().getID(); }
public void setPlateWellOriginX(Length wellOriginX, int plateIndex) { // Parents: {u'OME': None} // WellOriginX is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); o1.setWellOriginX(wellOriginX); }
public void setPlateFieldIndex(NonNegativeInteger fieldIndex, int plateIndex) { // Parents: {u'OME': None} // FieldIndex is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); o1.setFieldIndex(fieldIndex); }
public void setExperimenterInstitution(String institution, int experimenterIndex) { // Parents: {u'OME': None} // Institution is not a reference OME o0 = root; if (o0.sizeOfExperimenterList() == experimenterIndex) { o0.addExperimenter(new Experimenter()); } Experimenter o1 = o0.getExperimenter(experimenterIndex); o1.setInstitution(institution); }
public void setProjectDescription(String description, int projectIndex) { // Parents: {u'OME': None} // Description is not a reference OME o0 = root; if (o0.sizeOfProjectList() == projectIndex) { o0.addProject(new Project()); } Project o1 = o0.getProject(projectIndex); o1.setDescription(description); }
public void setExperimenterGroupDescription(String description, int experimenterGroupIndex) { // Parents: {u'OME': None} // Description is not a reference OME o0 = root; if (o0.sizeOfExperimenterGroupList() == experimenterGroupIndex) { o0.addExperimenterGroup(new ExperimenterGroup()); } ExperimenterGroup o1 = o0.getExperimenterGroup(experimenterGroupIndex); o1.setDescription(description); }
public void setExperimenterGroupName(String name, int experimenterGroupIndex) { // Parents: {u'OME': None} // Name is not a reference OME o0 = root; if (o0.sizeOfExperimenterGroupList() == experimenterGroupIndex) { o0.addExperimenterGroup(new ExperimenterGroup()); } ExperimenterGroup o1 = o0.getExperimenterGroup(experimenterGroupIndex); o1.setName(name); }
public void setBinaryOnlyMetadataFile(String metadataFile) { // Parents: {u'OME': None} // MetadataFile is not a reference OME o0 = root; if (o0.getBinaryOnly() == null) { o0.setBinaryOnly(new BinaryOnly()); } BinaryOnly o1 = o0.getBinaryOnly(); o1.setMetadataFile(metadataFile); }
public void setLightPathDichroicRef(String dichroic, int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // DichroicRef is reference and occurs more than once DichroicRef dichroic_reference = new DichroicRef(); dichroic_reference.setID(dichroic); model.addReference( root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath(), dichroic_reference); }
public String getLightPathEmissionFilterRef(int imageIndex, int channelIndex, int emissionFilterRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // EmissionFilterRef is reference and occurs more than once return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().getLinkedEmissionFilter(emissionFilterRefIndex).getID(); }
public String getLightPathExcitationFilterRef(int imageIndex, int channelIndex, int excitationFilterRefIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // ExcitationFilterRef is reference and occurs more than once return root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath().getLinkedExcitationFilter(excitationFilterRefIndex).getID(); }