setImagingEnvironment(new ImagingEnvironment( (Element) ImagingEnvironment_nodeList.get(0), model));
setImagingEnvironment(new ImagingEnvironment( (Element) ImagingEnvironment_nodeList.get(0), model));
/** Sets the Map value associated with this imaging environment */ public void setImagingEnvironmentMap(List<MapPair> map, int imageIndex) { OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setMap(map); }
public void setImagingEnvironmentAirPressure(Pressure airPressure, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // AirPressure is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setAirPressure(airPressure); }
public void setImagingEnvironmentCO2Percent(PercentFraction co2Percent, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // CO2Percent is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setCO2Percent(co2Percent); }
/** Sets the Map value associated with this imaging environment */ public void setImagingEnvironmentMap(List<MapPair> map, int imageIndex) { OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setMap(map); }
public void setImagingEnvironmentHumidity(PercentFraction humidity, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // Humidity is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setHumidity(humidity); }
public void setImagingEnvironmentHumidity(PercentFraction humidity, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // Humidity is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setHumidity(humidity); }
@BeforeClass public void setUp() throws Exception { // Add an Image/Pixels Image image = new Image(); image.setID("Image:0"); Pixels pixels = new Pixels(); pixels.setID("Pixels:0"); image.setPixels(pixels); // Add an ImagingEnvironment with an Map ImagingEnvironment imagingEnvironment = new ImagingEnvironment(); List<MapPair> map = new ArrayList<MapPair>(); map.add(new MapPair("a", "1")); map.add(new MapPair("d", "2")); map.add(new MapPair("c", "3")); map.add(new MapPair("b", "4")); map.add(new MapPair("e", "5")); map.add(new MapPair("c", "6")); assertEquals(6, map.size()); imagingEnvironment.setMap(map); image.setImagingEnvironment(imagingEnvironment); ome.addImage(image); }
public void setImagingEnvironmentCO2Percent(PercentFraction co2Percent, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // CO2Percent is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setCO2Percent(co2Percent); }
public void setImagingEnvironmentTemperature(Temperature temperature, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // Temperature is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setTemperature(temperature); }
public void setImagingEnvironmentAirPressure(Pressure airPressure, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // AirPressure is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setAirPressure(airPressure); }
public void setImagingEnvironmentTemperature(Temperature temperature, int imageIndex) { // Parents: {u'Image': {u'OME': None}} // Temperature is not a reference OME o0 = root; if (o0.sizeOfImageList() == imageIndex) { o0.addImage(new Image()); } Image o1 = o0.getImage(imageIndex); if (o1.getImagingEnvironment() == null) { o1.setImagingEnvironment(new ImagingEnvironment()); } ImagingEnvironment o2 = o1.getImagingEnvironment(); o2.setTemperature(temperature); }
image.setDescription("Image Description "+index); if (metadata) { image.setImagingEnvironment(createImageEnvironment()); image.setStageLabel(createStageLabel());