return new SequenceDescription( timePoints, viewSetups, null, missingViews );
public static SpimData createSpimData( int numPoints, double[] sigma, Interval rangeSimulation, Interval intervalRender, int rotAxis, double[] ratations, List<double[]> channelShifts, List<double[]> illumShifts, List<double[]> timeShifts, List<double[]> tileShifts, double relativeTileError, boolean centerAngles ) { SimulateBeads2 sb = new SimulateBeads2( numPoints, sigma, rangeSimulation, intervalRender ); SimulatedBeadsImgLoader2 loader = new SimulatedBeadsImgLoader2( sb, rotAxis, ratations, channelShifts, illumShifts, timeShifts, tileShifts ); SequenceDescription sd = new SequenceDescription( createTimePointsFromImgLoader( loader ), createViewSetupsFromImgLoader( loader ), null, new MissingViews( new ArrayList<>() ) ); sd.setImgLoader( loader ); SpimData res = new SpimData( new File(""), sd, createViewRegistrationsFromImgLoader( loader, relativeTileError, centerAngles ) ); return res; }
public static SpimData spimdataExample( final int[] angles, final int axis, final int numPoints, final double[] sigma, final Interval range ) { final TimePoints timepoints = LegacySimulatedBeadsImgLoader.createTimepoints(); final ArrayList< ViewSetup > setups = LegacySimulatedBeadsImgLoader.createViewSetups( angles, axis, range ); final MissingViews missingViews = null; final SimulateBeads sb = new SimulateBeads( angles, axis, numPoints, range, range, sigma ); final SequenceDescription sequenceDescription = new SequenceDescription( timepoints, setups, null, missingViews ); final ImgLoader imgLoader = new SimulatedBeadsImgLoader( sb ); sequenceDescription.setImgLoader( imgLoader ); // get the minimal resolution of all calibrations final double minResolution = 1.0; final ViewRegistrations viewRegistrations = LegacySimulatedBeadsImgLoader.createViewRegistrations( sequenceDescription.getViewDescriptions(), minResolution ); // finally create the SpimData itself based on the sequence description and the view registration final SpimData spimData = new SpimData( new File( "" ), sequenceDescription, viewRegistrations ); return spimData; }
SequenceDescription sd = new SequenceDescription( new TimePoints( timePoints ), viewSetups , null, new MissingViews( missingViewIds ));
final SequenceDescription sequenceDescription = new SequenceDescription( new TimePoints( timepoints ), viewSetups, null, missingViews ); final ImgLoader imgLoader = new MicroManagerImgLoader( mmFile, sequenceDescription ); sequenceDescription.setImgLoader( imgLoader );
final SequenceDescription seq = new SequenceDescription( new TimePoints( newTimepoints ), newViewSetups, null, null );
final SequenceDescription sequenceDescription = new SequenceDescription( new TimePoints( timepoints ), viewSetups, null, new MissingViews( new ArrayList<>() ) );
final SequenceDescription sequenceDescription = new SequenceDescription( timepoints, setups, null, new MissingViews( missingViews ) );
final SequenceDescription sequenceDescription = new SequenceDescription( timepoints, viewSetupsToProcess, oldSpimData.getSequenceDescription().getImgLoader(), new MissingViews( missingViews ) );
final SequenceDescription sequenceDescription = new SequenceDescription( timepoints, viewSetupsToProcess, null, missingViews );
final SequenceDescription sequenceDescription = new SequenceDescription( timepoints, setups, null, missingViews ); final ImgLoader imgLoader = new MicroManagerImgLoader( mmFile, sequenceDescription ); sequenceDescription.setImgLoader( imgLoader );
final SequenceDescription sequenceDescription = new SequenceDescription( timepoints, setups, null, missingViews ); final ImgLoader imgLoader = new LightSheetZ1ImgLoader( cziFile, imgFactory, sequenceDescription ); sequenceDescription.setImgLoader( imgLoader );
final SequenceDescription sequenceDescription = new SequenceDescription( timepoints, setups, null, missingViews ); final ImgLoader imgLoader = createAndInitImgLoader( ".", new File( directory ), imgFactory, sequenceDescription ); sequenceDescription.setImgLoader( imgLoader );
new SequenceDescription( timepoints, setups, null, missingViews ); final ImgLoader imgLoader = new DHMImgLoader(