@Override public void characters(char[] ch, int start, int length) { if (currentQName.equals("UserComment")) { String value = new String(ch, start, length); store.setImageDescription(value, 0); } }
@Override public void characters(char[] ch, int start, int length) { if (currentQName.equals("UserComment")) { String value = new String(ch, start, length); store.setImageDescription(value, 0); } }
@Override protected void initMetadataStore() throws FormatException { super.initMetadataStore(); MetadataStore store = makeFilterMetadata(); if (description != null) { description = description.replaceAll("\n", "; "); store.setImageDescription(description, 0); } populateMetadataStoreImageJ(store); }
@Override protected void initMetadataStore() throws FormatException { super.initMetadataStore(); MetadataStore store = makeFilterMetadata(); if (description != null) { description = description.replaceAll("\n", "; "); store.setImageDescription(description, 0); } populateMetadataStoreImageJ(store); }
@Override protected void initMetadataStore() throws FormatException { super.initMetadataStore(); MetadataStore store = makeFilterMetadata(); int simsIndex = seriesTypes.get("SIMS"); String instrument = (String) simsDescription.get("mibi.instrument"); store.setInstrumentID(formatMetadata("Instrument", instrument), simsIndex); store.setImageDescription((String) simsDescription.get("mibi.description"), simsIndex); String currentFile = FilenameUtils.getName(this.getCurrentFile()); for (Map.Entry<String, Integer> entry : seriesTypes.entrySet()) { String key = entry.getKey(); if (key != null) { store.setImageID(formatMetadata("Image", entry.getKey()), entry.getValue()); store.setImageName(currentFile + " " + entry.getKey(), entry.getValue()); } } for (int j = 0; j < channelIDs.size(); j++) { store.setChannelID(formatMetadata("Channel", channelIDs.get(j)), simsIndex, j); if (channelNames.get(j) != null) { store.setChannelName(formatMetadata("Target", channelNames.get(j)), simsIndex, j); } } }
@Override protected void initMetadataStore() throws FormatException { super.initMetadataStore(); MetadataStore store = makeFilterMetadata(); int simsIndex = seriesTypes.get("SIMS"); String instrument = (String) simsDescription.get("mibi.instrument"); store.setInstrumentID(formatMetadata("Instrument", instrument), simsIndex); store.setImageDescription((String) simsDescription.get("mibi.description"), simsIndex); String currentFile = FilenameUtils.getName(this.getCurrentFile()); for (Map.Entry<String, Integer> entry : seriesTypes.entrySet()) { String key = entry.getKey(); if (key != null) { store.setImageID(formatMetadata("Image", entry.getKey()), entry.getValue()); store.setImageName(currentFile + " " + entry.getKey(), entry.getValue()); } } for (int j = 0; j < channelIDs.size(); j++) { store.setChannelID(formatMetadata("Channel", channelIDs.get(j)), simsIndex, j); if (channelNames.get(j) != null) { store.setChannelName(formatMetadata("Target", channelNames.get(j)), simsIndex, j); } } }
store.setPixelsPhysicalSizeY(y, 0); store.setImageDescription(description, 0);
store.setPixelsPhysicalSizeY(y, 0); store.setImageDescription(description, 0);
store.setImageDescription("", 0);
store.setImageDescription("", 0);
store.setImageDescription(comment, 0);
store.setImageDescription(comment, 0);
store.setImageDescription(MAGIC_STRING, 0);
store.setImageDescription(MAGIC_STRING, 0);
store.setImageDescription(description, 0); MetadataTools.populatePixels(store, this);
store.setImageDescription(comment, 0);
store.setImageDescription(comment, 0);
store.setImageDescription(imageDescription, 0);
store.setImageDescription(serialNumber, i);
store.setImageDescription(serialNumber, i);