@Override public Object getMetadataStoreRoot() { FormatTools.assertId(currentId, true, 1); return getMetadataStore().getRoot(); }
@Override public Object getMetadataStoreRoot() { FormatTools.assertId(currentId, true, 1); return getMetadataStore().getRoot(); }
@Override public Object getMetadataStoreRoot() { FormatTools.assertId(getCurrentFile(), true, 2); return noStitch ? reader.getMetadataStoreRoot() : store.getRoot(); }
@Override public Object getMetadataStoreRoot() { FormatTools.assertId(getCurrentFile(), true, 2); return noStitch ? reader.getMetadataStoreRoot() : store.getRoot(); }
/** * @return true if min-max is set * @throws FormatException * @throws IOException */ @SuppressWarnings("unchecked") public boolean isMinMaxSet() throws FormatException, IOException { if (minMaxSet == null) { MetadataStore store = reader.getMetadataStore(); int series = reader.getSeries(); List<Pixels> pixels = (List<Pixels>) store.getRoot(); if (pixels == null) { return minMaxSet = true; } Pixels p = pixels.get(series); Channel c = p.getChannel(p.getSizeC().getValue() - 1); minMaxSet = c.getStatsInfo() != null; } return minMaxSet; }
calX, calY, calZ, calC, calT, rgbCCount); if (omexmlService.isOMEXMLRoot(store.getRoot())) {
String roiID = null; OME root = (OME) store.getRoot(); int roicount = root.sizeOfROIList(); int cntr = roicount;
try { String xml = service.getOMEXML(service.asRetrieve(store)); OMEXMLMetadataRoot root = (OMEXMLMetadataRoot) store.getRoot(); IMetadata meta = service.createOMEXMLMetadata(xml); if (series >= 0) {
String roiID = null; OME root = (OME) store.getRoot(); int roicount = root.sizeOfROIList(); int cntr = roicount;
&& ((MetadataStore) src).getRoot() == null) { throw new FormatException("Metadata object has null root; " + "call IMetadata.createRoot() first");
OMEXMLService service = new ServiceFactory().getInstance(OMEXMLService.class); if (service.isOMEXMLRoot(store.getRoot())) { MetadataStore baseStore = r.getMetadataStore(); if (service.isOMEXMLMetadata(baseStore)) {
&& ((MetadataStore) src).getRoot() == null) { throw new FormatException("Metadata object has null root; " + "call IMetadata.createRoot() first");
OMEXMLService service = new ServiceFactory().getInstance(OMEXMLService.class); if (service.isOMEXMLRoot(store.getRoot())) { MetadataStore baseStore = r.getMetadataStore(); if (service.isOMEXMLMetadata(baseStore)) {