addGlobalMeta("Storm center (Longitude)", centerLongitude); CoreMetadata m = core.get(0); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length sizeX = FormatTools.getPhysicalSizeX(physicalSize); Length sizeY = FormatTools.getPhysicalSizeY(physicalSize); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
private void populateMetadataStore() throws FormatException { MetadataStore store = makeFilterMetadata(); MetadataTools.populatePixels(store, this, true); for (int i=0; i<getSeriesCount(); i++) { // populate Image data if (i < imageNames.size()) { store.setImageName(imageNames.get(i), i); } String date = i < dates.size() ? dates.get(i) : ""; if (date != null && !date.equals("")) { store.setImageAcquisitionDate(new Timestamp(date), i); } } if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { for (int i=0; i<getSeriesCount(); i++) { // populate PlaneTiming data for (int q=0; q<core.get(i).imageCount; q++) { if (exposureTimes.get(i) != null) { store.setPlaneExposureTime(new Time(exposureTimes.get(i), UNITS.SECOND), i, q); } } // populate Experiment data if (i < types.size()) { store.setExperimentID(MetadataTools.createLSID("Experiment", i), i); store.setExperimentType(MetadataTools.getExperimentType(types.get(i)), i); } } } }
addGlobalMeta("Storm center (Longitude)", centerLongitude); CoreMetadata m = core.get(0); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length sizeX = FormatTools.getPhysicalSizeX(physicalSize); Length sizeY = FormatTools.getPhysicalSizeY(physicalSize); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
private void populateMetadataStore() throws FormatException { MetadataStore store = makeFilterMetadata(); MetadataTools.populatePixels(store, this, true); for (int i=0; i<getSeriesCount(); i++) { // populate Image data if (i < imageNames.size()) { store.setImageName(imageNames.get(i), i); } String date = i < dates.size() ? dates.get(i) : ""; if (date != null && !date.equals("")) { store.setImageAcquisitionDate(new Timestamp(date), i); } } if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { for (int i=0; i<getSeriesCount(); i++) { // populate PlaneTiming data for (int q=0; q<core.get(i).imageCount; q++) { if (exposureTimes.get(i) != null) { store.setPlaneExposureTime(new Time(exposureTimes.get(i), UNITS.SECOND), i, q); } } // populate Experiment data if (i < types.size()) { store.setExperimentID(MetadataTools.createLSID("Experiment", i), i); store.setExperimentType(MetadataTools.getExperimentType(types.get(i)), i); } } } }
super.initFile(id); in = new RandomAccessInputStream(id); CoreMetadata m = core.get(0); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length x = FormatTools.getPhysicalSizeX(sizeX); Length y = FormatTools.getPhysicalSizeY(sizeY); if (x != null) { store.setPixelsPhysicalSizeX(x, 0); store.setPixelsPhysicalSizeY(y, 0);
in.order(true); CoreMetadata m = core.get(0); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { in.skipBytes(44); MetadataTools.populatePixels(store, this);
super.initFile(id); in = new RandomAccessInputStream(id); CoreMetadata m = core.get(0); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length x = FormatTools.getPhysicalSizeX(sizeX); Length y = FormatTools.getPhysicalSizeY(sizeY); if (x != null) { store.setPixelsPhysicalSizeX(x, 0); store.setPixelsPhysicalSizeY(y, 0);
in.order(true); CoreMetadata m = core.get(0); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { in.skipBytes(44); MetadataTools.populatePixels(store, this);
int nBits = 0; CoreMetadata m = core.get(0); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length sizeX = FormatTools.getPhysicalSizeX(physicalSizeX); Length sizeY = FormatTools.getPhysicalSizeY(physicalSizeY); Length sizeZ = FormatTools.getPhysicalSizeZ(physicalSizeZ); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
CoreMetadata m = core.get(0); m.metadataComplete = true; if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { MetadataTools.populatePixels(store, this);
int nBits = 0; CoreMetadata m = core.get(0); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length sizeX = FormatTools.getPhysicalSizeX(physicalSizeX); Length sizeY = FormatTools.getPhysicalSizeY(physicalSizeY); Length sizeZ = FormatTools.getPhysicalSizeZ(physicalSizeZ); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
CoreMetadata m = core.get(0); m.metadataComplete = true; if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { MetadataTools.populatePixels(store, this);
CoreMetadata m = core.get(0); FormatTools.pixelTypeFromBytes(bytes, signed, bytes == 4); else if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) pixelSizeX = Double.parseDouble(v[2]) - Double.parseDouble(v[1]); pixelSizeX /= getSizeX(); sizeX = FormatTools.getPhysicalSizeX(pixelSizeX, unit); pixelSizeY = Double.parseDouble(v[2]) - Double.parseDouble(v[1]); pixelSizeY /= getSizeY(); sizeY = FormatTools.getPhysicalSizeY(pixelSizeY, unit); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { store.setImageDescription(remark, 0); store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
in = new RandomAccessInputStream(id); CoreMetadata m = core.get(0); MetadataTools.populatePixels(store, this); if (date != null) { date = DateTools.formatDate(date, DATE_FORMAT); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length sizeX = FormatTools.getPhysicalSizeX(pixelSizeX); Length sizeY = FormatTools.getPhysicalSizeY(pixelSizeY); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
CoreMetadata m = core.get(0); FormatTools.pixelTypeFromBytes(bytes, signed, bytes == 4); else if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) pixelSizeX = Double.parseDouble(v[2]) - Double.parseDouble(v[1]); pixelSizeX /= getSizeX(); sizeX = FormatTools.getPhysicalSizeX(pixelSizeX, unit); pixelSizeY = Double.parseDouble(v[2]) - Double.parseDouble(v[1]); pixelSizeY /= getSizeY(); sizeY = FormatTools.getPhysicalSizeY(pixelSizeY, unit); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { store.setImageDescription(remark, 0); store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
in = new RandomAccessInputStream(id); CoreMetadata m = core.get(0); MetadataTools.populatePixels(store, this); if (date != null) { date = DateTools.formatDate(date, DATE_FORMAT); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length sizeX = FormatTools.getPhysicalSizeX(pixelSizeX); Length sizeY = FormatTools.getPhysicalSizeY(pixelSizeY); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
private void readExtraMetadata(MetadataStore store) throws IOException { if (getMetadataOptions().getMetadataLevel() == MetadataLevel.MINIMUM) { return; size = 1.0 / (size * (1.0 / 25400)); Length sizeY = FormatTools.getPhysicalSizeY(size); if (sizeY != null) { store.setPixelsPhysicalSizeY(sizeY, 0); size = 1.0 / (size * (1.0 / 25400)); Length sizeX = FormatTools.getPhysicalSizeX(size); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0);
String date = null; CoreMetadata m = core.get(0); getMetadataOptions().getMetadataLevel() == MetadataLevel.MINIMUM; MetadataTools.populatePixels(store, this, !minimumMetadata); store.setPlanePositionY(yPos, 0, 0); Length sizeX = FormatTools.getPhysicalSizeX(deltaX); Length sizeY = FormatTools.getPhysicalSizeY(deltaY); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
String date = null; CoreMetadata m = core.get(0); getMetadataOptions().getMetadataLevel() == MetadataLevel.MINIMUM; MetadataTools.populatePixels(store, this, !minimumMetadata); store.setPlanePositionY(yPos, 0, 0); Length sizeX = FormatTools.getPhysicalSizeX(deltaX); Length sizeY = FormatTools.getPhysicalSizeY(deltaY); if (sizeX != null) { store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);
super.initMetadataStore(); MetadataStore store = makeFilterMetadata(); MetadataTools.populatePixels(store, this); if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { Length sizeX = FormatTools.getPhysicalSizeX(pixelSizeX); Length sizeY = FormatTools.getPhysicalSizeY(pixelSizeY); Length sizeZ = FormatTools.getPhysicalSizeZ(pixelSizeZ); store.setPixelsPhysicalSizeX(sizeX, 0); store.setPixelsPhysicalSizeY(sizeY, 0);