@Test public void testMultirefWithStateTransitions() { final List<Container> containers = getMultiRefContainersForStateTest(); // first container is single-ref assertContainerState(containers.get(0), 1, 0, 1, 3); // when other refs are added, subsequent containers are multiref assertContainerState(containers.get(1), 2, Slice.MULTI_REFERENCE, Slice.NO_ALIGNMENT_START, Slice.NO_ALIGNMENT_SPAN); assertContainerState(containers.get(2), 3, Slice.MULTI_REFERENCE, Slice.NO_ALIGNMENT_START, Slice.NO_ALIGNMENT_SPAN); }
final ContainerParser parser = new ContainerParser(samFileHeader); final List<Container> containers = ContainerFactoryTest.getMultiRefContainersForStateTest();