public <A extends Alias> A createAlias(AnnotatedObject<?,A> parent, String name, CvAliasType type) { return AliasUtils.createAlias(parent, name, type ); }
public <A extends Alias> A createAliasGeneName(AnnotatedObject<?,A> parent, String name) { return AliasUtils.createAliasGeneName(parent, name); }
public static <A extends Alias> A createAlias(AnnotatedObject<?,A> parent, String name, CvAliasType aliasType) { A alias = (A) newAliasInstanceFor(parent.getClass()); alias.setOwner(parent.getOwner()); alias.setParent(parent); alias.setCvAliasType(aliasType); alias.setName(name); return alias; }
public static <A extends Alias> A createAlias(AnnotatedObject<?, A> parent, String name, CvAliasType aliasType) { A alias = (A) newAliasInstanceFor(parent.getClass()); alias.setOwner(parent.getOwner()); alias.setParent(parent); alias.setCvAliasType(aliasType); alias.setName(name); return alias; }
public <A extends Alias> A createAlias(AnnotatedObject<?,A> parent, String name, CvAliasType type) { return AliasUtils.createAlias(parent, name, type ); }
public static <A extends Alias> A createAlias(AnnotatedObject<?, A> parent, String name, CvAliasType aliasType) { A alias = (A) newAliasInstanceFor(parent.getClass()); alias.setOwner(parent.getOwner()); alias.setParent(parent); alias.setCvAliasType(aliasType); alias.setName(name); return alias; }
public <A extends Alias> A createAliasGeneName(AnnotatedObject<?,A> parent, String name) { return AliasUtils.createAliasGeneName(parent, name); }
public <A extends Alias> A createAlias(AnnotatedObject<?,A> parent, String name, String typeIdentity, String type) { return AliasUtils.createAlias(parent, name, createCvObject( CvAliasType.class, typeIdentity, type ) ); }
public <A extends Alias> A createAliasGeneName(AnnotatedObject<?,A> parent, String name) { return AliasUtils.createAliasGeneName(parent, name); }
public <A extends Alias> A createAlias(AnnotatedObject<?,A> parent, String name, String typeIdentity, String type) { return AliasUtils.createAlias(parent, name, createCvObject( CvAliasType.class, typeIdentity, type ) ); }
public static <A extends Alias> A createAliasGeneName(AnnotatedObject<?,A> parent, String name) { CvAliasType cvGeneName = CvObjectUtils.createCvObject(parent.getOwner(), CvAliasType.class, CvAliasType.GENE_NAME_MI_REF, CvAliasType.GENE_NAME); return createAlias(parent, name, cvGeneName); }
public static <A extends Alias> A createAliasGeneName(AnnotatedObject<?, A> parent, String name) { CvAliasType cvGeneName = CvObjectUtils.createCvObject(parent.getOwner(), CvAliasType.class, CvAliasType.GENE_NAME_MI_REF, CvAliasType.GENE_NAME); return createAlias(parent, name, cvGeneName); }
public static <A extends Alias> A createAliasGeneName(AnnotatedObject<?, A> parent, String name) { CvAliasType cvGeneName = CvObjectUtils.createCvObject(parent.getOwner(), CvAliasType.class, CvAliasType.GENE_NAME_MI_REF, CvAliasType.GENE_NAME); return createAlias(parent, name, cvGeneName); }
protected Alias toAlias( CvObject cvobj, String aliasName ) { Institution owner = IntactContext.getCurrentInstance().getInstitution(); CvAliasType alias = getCvObjectByLabel( CvAliasType.class, CvAliasType.GO_SYNONYM ); if ( alias == null ) { if ( log.isTraceEnabled() ) log.trace( "alias ==null creating new" ); alias = CvObjectUtils.createCvObject( owner, CvAliasType.class, CvAliasType.GO_SYNONYM_MI_REF, CvAliasType.GO_SYNONYM ); } return AliasUtils.createAlias( cvobj, aliasName, alias ); }
institution.addXref(xref); InstitutionAlias alias = AliasUtils.createAlias(institution, EBI_INSTITUTION_ALIAS, null); institution.addAlias(alias);