getDaoFactory().getXrefDao().persist(xref); log.debug("Added required PSI Xref to " + shortlabel + ": " + mi);
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
private static void createXref( Protein protein, XrefTag xrefTag, boolean identity ) throws IntactException { CvXrefQualifier qualifier = null; if ( identity ) { qualifier = ControlledVocabularyRepository.getIdentityQualifier(); } CvDatabase database = XrefChecker.getCvDatabase( xrefTag.getDb() ); if ( database == null ) { // failed to find the database, skip the Xref creation } else { InteractorXref xref = new InteractorXref( IntactContext.getCurrentInstance().getInstitution(), database, xrefTag.getId(), xrefTag.getSecondary(), xrefTag.getVersion(), qualifier ); protein.addXref( xref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref ); } }
private static void createXref( Protein protein, XrefTag xrefTag, boolean identity ) throws IntactException { CvXrefQualifier qualifier = null; if ( identity ) { qualifier = ControlledVocabularyRepository.getIdentityQualifier(); } CvDatabase database = XrefChecker.getCvDatabase( xrefTag.getDb() ); if ( database == null ) { // failed to find the database, skip the Xref creation } else { InteractorXref xref = new InteractorXref( IntactContext.getCurrentInstance().getInstitution(), database, xrefTag.getId(), xrefTag.getSecondary(), xrefTag.getVersion(), qualifier ); protein.addXref( xref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref ); } }
private static void createXref( Protein protein, XrefTag xrefTag, boolean identity ) throws IntactException { CvXrefQualifier qualifier = null; if ( identity ) { qualifier = ControlledVocabularyRepository.getIdentityQualifier(); } CvDatabase database = XrefChecker.getCvDatabase( xrefTag.getDb() ); if ( database == null ) { // failed to find the database, skip the Xref creation } else { InteractorXref xref = new InteractorXref( IntactContext.getCurrentInstance().getInstitution(), database, xrefTag.getId(), xrefTag.getSecondary(), xrefTag.getVersion(), qualifier ); protein.addXref( xref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref ); } }
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( primaryXref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( seeAlsoXref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( primaryXref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( seeAlsoXref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( primaryXref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( seeAlsoXref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
qualifier ); feature.addXref( xref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
qualifier ); feature.addXref( xref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
qualifier ); feature.addXref( xref ); IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );