How to use
uk.ac.ebi.intact.model.SmallMoleculeImpl
constructor

Best Java code snippets using uk.ac.ebi.intact.model.SmallMoleculeImpl.<init> (Showing top 3 results out of 315)

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}

public SmallMolecule createSmallMolecule(String chebiId, String shortLabel) {
   CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.SMALL_MOLECULE_MI_REF,
                        CvInteractorType.SMALL_MOLECULE);
  SmallMolecule smallMolecule = new SmallMoleculeImpl(shortLabel, getInstitution(), intType);
  InteractorXref idXref = createIdentityXrefChebi(smallMolecule, chebiId);
  smallMolecule.addXref(idXref);
  InteractorAlias alias = createAliasGeneName(smallMolecule, shortLabel.toUpperCase());
  smallMolecule.addAlias(alias);
  return smallMolecule;
}

public SmallMolecule createSmallMolecule(String chebiId, String shortLabel) {
   CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.SMALL_MOLECULE_MI_REF,
                        CvInteractorType.SMALL_MOLECULE);
  SmallMolecule smallMolecule = new SmallMoleculeImpl(shortLabel, getInstitution(), intType);
  InteractorXref idXref = createIdentityXrefChebi(smallMolecule, chebiId);
  smallMolecule.addXref(idXref);
  InteractorAlias alias = createAliasGeneName(smallMolecule, shortLabel.toUpperCase());
  smallMolecule.addAlias(alias);
  return smallMolecule;
}

  interactor = new ProteinImpl( getInstitution(), organism, shortLabel, interactorType );
} else if ( CvInteractorType.SMALL_MOLECULE_MI_REF.equals(typeId)) {
  interactor = new SmallMoleculeImpl( shortLabel, getInstitution(), interactorType );
  interactor.setBioSource( organism );
} else if ( CvInteractorType.NUCLEIC_ACID_MI_REF.equals(typeId) || dnaMis.contains(typeId) ||
  interactor = new ProteinImpl( getInstitution(), organism, shortLabel, interactorType );
} else if ( interactorTypeLabel.equals( CvInteractorType.SMALL_MOLECULE ) ) {
  interactor = new SmallMoleculeImpl( shortLabel, getInstitution(), interactorType );
  interactor.setBioSource( organism );
} else if (CvInteractorType.NUCLEIC_ACID.equals(interactorTypeLabel) || dnaLabels.contains(interactorTypeLabel) ||

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How to use uk.ac.ebi.intact.model.SmallMoleculeImplconstructor

Best Java code snippets using uk.ac.ebi.intact.model.SmallMoleculeImpl.<init> (Showing top 3 results out of 315)

How to use
uk.ac.ebi.intact.model.SmallMoleculeImpl
constructor