public Component createComponentBait(Interactor interactor) { Interaction interaction = createInteractionDirect(); return createComponentBait(interaction, interactor); }
public Component createComponentPrey(Interactor interactor) { Interaction interaction = createInteractionDirect(); return createComponentPrey(interaction, interactor); }
public Component createComponentBait(Interactor interactor) { Interaction interaction = createInteractionDirect(); return createComponentBait(interaction, interactor); }
public Component createComponentPrey(Interactor interactor) { Interaction interaction = createInteractionDirect(); return createComponentPrey(interaction, interactor); }
public Component createComponentEnzymeTarget(Interactor interactor) { Interaction interaction = createInteractionDirect(); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_TARGET_PSI_REF, CvExperimentalRole.ENZYME_TARGET); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentEnzymeTarget(Interactor interactor) { Interaction interaction = createInteractionDirect(); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_TARGET_PSI_REF, CvExperimentalRole.ENZYME_TARGET); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentEnzyme(Interactor interactor) { Interaction interaction = createInteractionDirect(); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_PSI_REF, CvExperimentalRole.ENZYME); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentEnzyme(Interactor interactor) { Interaction interaction = createInteractionDirect(); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_PSI_REF, CvExperimentalRole.ENZYME); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Interaction createInteraction(String ... interactorShortLabels) { Interaction interaction = createInteractionDirect(); Protein prot = null; for (String interactorShortLabel : interactorShortLabels) { prot = createDeterministicProtein(interactorShortLabel, interactorShortLabel); createComponentNeutral(interaction, prot); } if (interactorShortLabels.length == 1) { createComponentNeutral(interaction, prot); } String shortLabel = InteractionUtils.calculateShortLabel(interaction); interaction.setShortLabel(shortLabel); return interaction; }
public Interaction createInteraction(String ... interactorShortLabels) { Interaction interaction = createInteractionDirect(); Protein prot = null; for (String interactorShortLabel : interactorShortLabels) { prot = createDeterministicProtein(interactorShortLabel, interactorShortLabel); createComponentNeutral(interaction, prot); } if (interactorShortLabels.length == 1) { createComponentNeutral(interaction, prot); } String shortLabel = InteractionUtils.calculateShortLabel(interaction); interaction.setShortLabel(shortLabel); return interaction; }