private void synchronizeInteraction( Interaction interaction, boolean synchronizeAnnotatedAttributes ) { interaction.setCvInteractionType( synchronize( interaction.getCvInteractionType() ) ); interaction.setCvInteractorType( synchronize( interaction.getCvInteractorType() ) ); if (IntactCore.isInitializedAndDirty(interaction.getComponents())){ Collection<Component> components = synchronizeCollection(interaction.getComponents()); interaction.getComponents().clear(); interaction.getComponents().addAll(components); } interaction.setBioSource( synchronize( interaction.getBioSource() ) ); if (IntactCore.isInitializedAndDirty(interaction.getExperiments())){ Collection<Experiment> experiment = synchronizeCollection(interaction.getExperiments()); interaction.getExperiments().clear(); interaction.getExperiments().addAll(experiment); } // cannot call setConfidences in interaction because of orphan relationship limitation if (IntactCore.isInitializedAndDirty(interaction.getConfidences())){ Collection<Confidence> confidences = synchronizeConfidences(interaction.getConfidences(), interaction); interaction.getConfidences().clear(); interaction.getConfidences().addAll(confidences); } // cannot call setParameters in interaction because of orphan relationship limitation if (IntactCore.isInitializedAndDirty(interaction.getParameters())){ Collection<InteractionParameter> interactionParameters = synchronizeInteractionParameters(interaction.getParameters(), interaction); interaction.getParameters().clear(); interaction.getParameters().addAll(interactionParameters); } if (synchronizeAnnotatedAttributes){ synchronizeAnnotatedObjectCommons( interaction ); } }
private void synchronizeInteraction( Interaction interaction, boolean synchronizeAnnotatedAttributes ) { interaction.setCvInteractionType( synchronize( interaction.getCvInteractionType() ) ); interaction.setCvInteractorType( synchronize( interaction.getCvInteractorType() ) ); if (IntactCore.isInitializedAndDirty(interaction.getComponents())){ Collection<Component> components = synchronizeCollection(interaction.getComponents()); interaction.getComponents().clear(); interaction.getComponents().addAll(components); } interaction.setBioSource( synchronize( interaction.getBioSource() ) ); if (IntactCore.isInitializedAndDirty(interaction.getExperiments())){ Collection<Experiment> experiment = synchronizeCollection(interaction.getExperiments()); interaction.getExperiments().clear(); interaction.getExperiments().addAll(experiment); } // cannot call setConfidences in interaction because of orphan relationship limitation if (IntactCore.isInitializedAndDirty(interaction.getConfidences())){ Collection<Confidence> confidences = synchronizeConfidences(interaction.getConfidences(), interaction); interaction.getConfidences().clear(); interaction.getConfidences().addAll(confidences); } // cannot call setParameters in interaction because of orphan relationship limitation if (IntactCore.isInitializedAndDirty(interaction.getParameters())){ Collection<InteractionParameter> interactionParameters = synchronizeInteractionParameters(interaction.getParameters(), interaction); interaction.getParameters().clear(); interaction.getParameters().addAll(interactionParameters); } if (synchronizeAnnotatedAttributes){ synchronizeAnnotatedObjectCommons( interaction ); } }