Public

createAttributeList

generate the bibliographical reference of the Experiment out of the Xref having
the CvDatabase pubme

createBibRef

createConfidence

Generate and add to the given element the Xrefs of the experiment (but no
pubmed). 
The given set of

createExperimentXrefs

createNames

get the value what will be used as ID of the experiment.

getExperimentId

getInstance

LocalDateTime

Running tasks concurrently on multiple threads

Wraps an existing InputStream and buffers the input. Expensive interaction with
the underlying input

java.io.BufferedInputStream

A FileInputStream obtains input bytes from a file in a file system. What files
are available depends

java.io.FileInputStream

Thrown to indicate that a malformed URL has occurred. Either no legal protocol
could be found in a s

java.net.MalformedURLException

A Uniform Resource Locator that identifies the location of an Internet resource
as specified by RFC 

java.net.URL

 Calendar is an abstract base class for converting between a Date object and a
set of integer fields

java.util.Calendar

javax.swing.JFrame

getSystemService

requestLocationUpdates

setContentView

/**
     * Generated an experimentDescription out of an IntAct Experiment.
     *
     * @param session
     * @param parent     the Element to which we will add the experimentDescription.
     * @param experiment the IntAct experiment that we convert to PSI.
     *
     * @return the generated experimentDescription Element.
     */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an "

"You must give a <experimentList> to build a "

"You must give a non null Experiment to build an "

// 3. Attaching the newly created element to the parent...

"You must give a non null parent to build an experimentDescription."

"You must give a non null Experiment to build an experimentDescription."

//       names bibref xref hostOrganism interactionDetection participantDetection featureDetection confidence attributeList

// TODO what if no pubmed Xref ... no bibRef section ?

// 7. Generating OPTIONAL interactionDetection ... mapped to Experiment.CvInteraction.

// 8. Generating OPTIONAL participantDetection ... mapped to Experiment.CvIdentification.

// 9. Generating OPTIONAL featureDetection...

// actually, we have (so far) nothing like that in the IntAct Experiment object ... skip that tag.

// 12. Generating attributeList (if any)...

// 12. Attaching the newly created element to the parent...

How to use getExperimentIdmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1.getExperimentId (Showing top 6 results out of 315)

How to use
getExperimentId
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1