uk.ac.ebi.intact.application.dataConversion.psiDownload.PsiDocumentFactory.createSource java code examples

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private void myMethod () {
 OutputStreamWriter o =OutputStream out;new OutputStreamWriter(out)
OutputStream out;String charsetName;new OutputStreamWriter(out, charsetName)
HttpURLConnection connection;new OutputStreamWriter(connection.getOutputStream())
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}

/**
 * Builds an empty PSI document version 2.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 2.
 */
private static Document buildPsiVersion2( UserSessionDownload session, Institution institution ) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument( "net:sf:psidev:mi", "entrySet", null );  //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute( "xmlns", "net:sf:psidev:mi" );
  psiEntrySet.setAttribute( "xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance" );
  psiEntrySet.setAttribute( "xsi:schemaLocation",
               "net:sf:psidev:mi " + URL_SCHEMA_VERSION_2 );
  psiEntrySet.setAttribute( "level", "1" );
  psiEntrySet.setAttribute( "version", "2" );
  Element entry = document.createElement( "entry" );
  psiEntrySet.appendChild( entry );
  Element source = createSource( session, document, institution );
  entry.appendChild( source );
  return document;
}

/**
 * Builds an empty PSI document version 2.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 2.
 */
private static Document buildPsiVersion2( UserSessionDownload session, Institution institution ) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument( "net:sf:psidev:mi", "entrySet", null );  //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute( "xmlns", "net:sf:psidev:mi" );
  psiEntrySet.setAttribute( "xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance" );
  psiEntrySet.setAttribute( "xsi:schemaLocation",
               "net:sf:psidev:mi " + URL_SCHEMA_VERSION_2 );
  psiEntrySet.setAttribute( "level", "1" );
  psiEntrySet.setAttribute( "version", "2" );
  Element entry = document.createElement( "entry" );
  psiEntrySet.appendChild( entry );
  Element source = createSource( session, document, institution );
  entry.appendChild( source );
  return document;
}

/**
 * Builds an empty PSI document version 1.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 1.
 */
private static Document buildPsiVersion1( UserSessionDownload session, Institution institution ) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument( "net:sf:psidev:mi", "entrySet", null );  //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute( "xmlns", "net:sf:psidev:mi" );
  psiEntrySet.setAttribute( "xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance" );
  psiEntrySet.setAttribute( "xsi:schemaLocation",
               "net:sf:psidev:mi " + URL_SCHEMA_VERSION_1 );
  psiEntrySet.setAttribute( "level", "1" );
  psiEntrySet.setAttribute( "version", "1" );
  Element entry = document.createElement( "entry" );
  psiEntrySet.appendChild( entry );
  Element source = createSource( session, document, institution );
  entry.appendChild( source );
  return document;
}

/**
 * Builds an empty PSI document version 1.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 1.
 */
private static Document buildPsiVersion1( UserSessionDownload session, Institution institution ) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument( "net:sf:psidev:mi", "entrySet", null );  //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute( "xmlns", "net:sf:psidev:mi" );
  psiEntrySet.setAttribute( "xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance" );
  psiEntrySet.setAttribute( "xsi:schemaLocation",
               "net:sf:psidev:mi " + URL_SCHEMA_VERSION_1 );
  psiEntrySet.setAttribute( "level", "1" );
  psiEntrySet.setAttribute( "version", "1" );
  Element entry = document.createElement( "entry" );
  psiEntrySet.appendChild( entry );
  Element source = createSource( session, document, institution );
  entry.appendChild( source );
  return document;
}

/**
 * Builds an empty PSI document version 1.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 1.
 */
private static Document buildPsiVersion1(UserSessionDownload session,
    Institution institution) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument("net:sf:psidev:mi", "entrySet",
      null); //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute("xmlns", "net:sf:psidev:mi");
  psiEntrySet.setAttribute("xmlns:xsi",
      "http://www.w3.org/2001/XMLSchema-instance");
  psiEntrySet.setAttribute("xsi:schemaLocation", "net:sf:psidev:mi "
      + URL_SCHEMA_VERSION_1);
  psiEntrySet.setAttribute("level", "1");
  psiEntrySet.setAttribute("version", "1");
  Element entry = document.createElement("entry");
  psiEntrySet.appendChild(entry);
  Element source = createSource(session, document, institution);
  entry.appendChild(source);
  return document;
}

/**
 * Builds an empty PSI document version 3.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 3.
 */
private static Document buildPsiVersion25( UserSessionDownload session, Institution institution ) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument( "net:sf:psidev:mi", "entrySet", null );  //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute( "xmlns", "net:sf:psidev:mi" );
  psiEntrySet.setAttribute( "xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance" );
  psiEntrySet.setAttribute( "xsi:schemaLocation",
               "net:sf:psidev:mi " + URL_SCHEMA_VERSION_25 );
  // values fixed by the schema
  psiEntrySet.setAttribute( "level", "2" );
  psiEntrySet.setAttribute( "version", "5" );
  psiEntrySet.setAttribute( "minorVersion", "3" );
  Element entry = document.createElement( "entry" );
  psiEntrySet.appendChild( entry );
  Element source = createSource( session, document, institution );
  entry.appendChild( source );
  return document;
}

/**
 * Builds an empty PSI document version 3.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 3.
 */
private static Document buildPsiVersion25( UserSessionDownload session, Institution institution ) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument( "net:sf:psidev:mi", "entrySet", null );  //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute( "xmlns", "net:sf:psidev:mi" );
  psiEntrySet.setAttribute( "xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance" );
  psiEntrySet.setAttribute( "xsi:schemaLocation",
               "net:sf:psidev:mi " + URL_SCHEMA_VERSION_25 );
  // values fixed by the schema
  psiEntrySet.setAttribute( "level", "2" );
  psiEntrySet.setAttribute( "version", "5" );
  psiEntrySet.setAttribute( "minorVersion", "3" );
  Element entry = document.createElement( "entry" );
  psiEntrySet.appendChild( entry );
  Element source = createSource( session, document, institution );
  entry.appendChild( source );
  return document;
}

/**
 * Builds an empty PSI document version 3.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 3.
 */
private static Document buildPsiVersion25(UserSessionDownload session,
    Institution institution) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument("net:sf:psidev:mi", "entrySet",
      null); //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute("xmlns", "net:sf:psidev:mi");
  psiEntrySet.setAttribute("xmlns:xsi",
      "http://www.w3.org/2001/XMLSchema-instance");
  psiEntrySet.setAttribute("xsi:schemaLocation", "net:sf:psidev:mi "
      + URL_SCHEMA_VERSION_25);
  // values fixed by the schema
  psiEntrySet.setAttribute("level", "2");
  psiEntrySet.setAttribute("version", "5");
  psiEntrySet.setAttribute("minorVersion", "3");
  Element entry = document.createElement("entry");
  psiEntrySet.appendChild(entry);
  Element source = createSource(session, document, institution);
  entry.appendChild(source);
  return document;
}

/**
 * Builds an empty PSI document version 2.
 *
 * @param institution the source of that PSI Document.
 *
 * @return an empty PSI document version 2.
 */
private static Document buildPsiVersion2(UserSessionDownload session,
    Institution institution) {
  DOMImplementationImpl impl = new DOMImplementationImpl();
  Document document = impl.createDocument("net:sf:psidev:mi", "entrySet",
      null); //doctype only used by DTDs !
  Element psiEntrySet = document.getDocumentElement();
  psiEntrySet.setAttribute("xmlns", "net:sf:psidev:mi");
  psiEntrySet.setAttribute("xmlns:xsi",
      "http://www.w3.org/2001/XMLSchema-instance");
  psiEntrySet.setAttribute("xsi:schemaLocation", "net:sf:psidev:mi "
      + URL_SCHEMA_VERSION_2);
  psiEntrySet.setAttribute("level", "1");
  psiEntrySet.setAttribute("version", "2");
  Element entry = document.createElement("entry");
  psiEntrySet.appendChild(entry);
  Element source = createSource(session, document, institution);
  entry.appendChild(source);
  return document;
}

Element source = PsiDocumentFactory.createSource( this, root, this.source );
entry.appendChild( source );

Element source = PsiDocumentFactory.createSource( this, root, this.source );
entry.appendChild( source );

Element source = PsiDocumentFactory.createSource( this, root, this.source );
entry.appendChild( source );

Javadoc

generate the source of a PSI document.

Popular methods of PsiDocumentFactory

buildPsiDocument
Builds an empty PSI document of the specified version.
buildPsiVersion1
Builds an empty PSI document version 1.
buildPsiVersion2
Builds an empty PSI document version 2.
buildPsiVersion25
Builds an empty PSI document version 3.
getReleaseDate
Create today's date

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How to use createSourcemethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.PsiDocumentFactory

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.PsiDocumentFactory.createSource (Showing top 12 results out of 315)

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uk.ac.ebi.intact.application.dataConversion.psiDownload.PsiDocumentFactory