@Override public SampleTissue getMatchingGhostTissue(SampleTissue tissue) { validateGhostTissueLookup(tissue); Criteria criteria = currentSession().createCriteria(SampleTissueImpl.class); criteria.add(Restrictions.eq("isSynthetic", true)); criteria.add(Restrictions.eq("parent.id", tissue.getParent().getId())); criteria.add(Restrictions.eq("tissueOrigin.id", tissue.getTissueOrigin().getId())); criteria.add(Restrictions.eq("tissueType.id", tissue.getTissueType().getId())); criteria.add(Restrictions.eq("timesReceived", tissue.getTimesReceived())); criteria.add(Restrictions.eq("tubeNumber", tissue.getTubeNumber())); if (tissue.getPassageNumber() == null) { criteria.add(Restrictions.isNull("passageNumber")); } else { criteria.add(Restrictions.eq("passageNumber", tissue.getPassageNumber())); } return (SampleTissue) criteria.uniqueResult(); }
private void validateGhostTissueLookup(SampleTissue tissue) { if (tissue.getParent() == null || tissue.getParent().getId() == SampleImpl.UNSAVED_ID || tissue.getTissueOrigin() == null || tissue.getTissueOrigin().getId() == TissueOrigin.UNSAVED_ID || tissue.getTissueType() == null || tissue.getTissueType().getId() == TissueTypeImpl.UNSAVED_ID || tissue.getTimesReceived() == null || tissue.getTubeNumber() == null) { throw new IllegalArgumentException("Missing tissue attributes required for lookup"); } }
@Override public void update(TissueType tissueType) throws IOException { authorizationManager.throwIfNonAdmin(); TissueType updatedTissueType = get(tissueType.getId()); updatedTissueType.setAlias(tissueType.getAlias()); updatedTissueType.setDescription(tissueType.getDescription()); User user = authorizationManager.getCurrentUser(); updatedTissueType.setUpdatedBy(user); tissueTypeDao.update(updatedTissueType); }
public static TissueTypeDto asDto(@Nonnull TissueType from) { TissueTypeDto dto = new TissueTypeDto(); dto.setId(from.getId()); dto.setAlias(from.getAlias()); dto.setDescription(from.getDescription()); dto.setLabel(from.getItemLabel()); dto.setCreatedById(from.getCreatedBy().getUserId()); dto.setCreationDate(formatDateTime(from.getCreationDate())); dto.setUpdatedById(from.getUpdatedBy().getUserId()); dto.setLastUpdated(formatDateTime(from.getLastUpdated())); return dto; }
private static SampleTissueDto asTissueSampleDto(@Nonnull SampleTissue from) { SampleTissueDto dto = new SampleTissueDto(); dto.setPassageNumber(from.getPassageNumber()); dto.setTimesReceived(from.getTimesReceived()); dto.setSecondaryIdentifier(from.getSecondaryIdentifier()); dto.setRegion(from.getRegion()); dto.setTubeNumber(from.getTubeNumber()); if (from.getLab() != null) { dto.setLabId(from.getLab().getId()); } if (from.getTissueOrigin() != null) { dto.setTissueOriginId(from.getTissueOrigin().getId()); } if (from.getTissueType() != null) { dto.setTissueTypeId(from.getTissueType().getId()); } if (from.getTissueMaterial() != null) { dto.setTissueMaterialId(from.getTissueMaterial().getId()); } return dto; }