String baseUri = ""; final RelationshipXref x = getInteractorPrimaryRef(interactor.getXref()); if(x != null) { baseUri += encode(x.getDb() + "_" + x.getId()); ((PhysicalEntity)entity).setCellularLocation(cellularLocation); final Set<Xref> bpXrefsOfInteractor = getXrefs(interactor.getXref()); final BioSource bioSource = getBioSource(interactor);
jInteractor.setXref( xrefConverter.toJaxb( mInteractor.getXref() ) );
jInteractor.setXref( xrefConverter.toJaxb( mInteractor.getXref() ) );
interactorType = new InteractorType(); String xrefPrimaryDB = xmlInteractor.getXref().getPrimaryRef().getDb(); if (xrefPrimaryDB.equals(UNIPROT)) {
IntactConverterUtils.populateXref( psiObject.getXref(), interactor, xrefConverter ); IntactConverterUtils.populateAnnotations( psiObject, interactor, getInstitution(), annotationConverter );