private EntrySet createEntrySet(Collection<Entry> entry) { return new EntrySet(entry, 2, 5, 3); }
public static EntrySet createEntrySet(PsimiXmlVersion version, Collection<Entry> entries) { EntrySet entrySet = new EntrySet(version); entrySet.getEntries().addAll(entries); return entrySet; }
public static void main( String[] args ) throws PsimiXmlWriterException { EntrySet entrySet = new EntrySet( 2, 5, 3 ); // Initialise your entryset, add interactions ... PsimiXmlWriter writer = new PsimiXmlWriter(); writer.write( entrySet, new File( "path/to/outputfile.xml" ) ); } }
EntrySet entrySet = new EntrySet(PsimiXmlVersion.VERSION_25_UNDEFINED);
private EntrySet mergeEntriesIfNecessary(EntrySet entrySet){ if (entrySet == null){ return null; } if (entrySet.getEntries().size() > 1){ Iterator<Entry> entryIterator = entrySet.getEntries().iterator(); Entry originalEntry = entryIterator.next(); while (entryIterator.hasNext()){ Entry newEntry = entryIterator.next(); originalEntry.getExperiments().addAll(newEntry.getExperiments()); originalEntry.getInteractors().addAll(newEntry.getInteractors()); originalEntry.getInteractions().addAll(newEntry.getInteractions()); } return new EntrySet(Arrays.asList(originalEntry), entrySet.getLevel(), entrySet.getVersion(), entrySet.getMinorVersion()); } return entrySet; }
public psidev.psi.mi.xml.model.EntrySet fromJaxb( psidev.psi.mi.xml253.jaxb.EntrySet jEntrySet ) throws ConverterException { if ( jEntrySet == null ) { throw new IllegalArgumentException( "You must give a non null JAXB EntrySet." ); } psidev.psi.mi.xml.model.EntrySet mEntrySet = new psidev.psi.mi.xml.model.EntrySet(); // Initialise the model reading the Jaxb object // 1. set attributes mEntrySet.setLevel( jEntrySet.getLevel() ); mEntrySet.setVersion( jEntrySet.getVersion() ); mEntrySet.setMinorVersion( jEntrySet.getMinorVersion() ); // 2. set encapsulated objects for ( psidev.psi.mi.xml253.jaxb.EntryType jEntry : jEntrySet.getEntries() ) { mEntrySet.getEntries().add( entryConverter.fromJaxb( jEntry ) ); } return mEntrySet; }
public psidev.psi.mi.xml.model.EntrySet fromJaxb( psidev.psi.mi.xml254.jaxb.EntrySet jEntrySet ) throws ConverterException { if ( jEntrySet == null ) { throw new IllegalArgumentException( "You must give a non null JAXB EntrySet." ); } psidev.psi.mi.xml.model.EntrySet mEntrySet = new psidev.psi.mi.xml.model.EntrySet(); // Initialise the model reading the Jaxb object // 1. set attributes mEntrySet.setLevel( jEntrySet.getLevel() ); mEntrySet.setVersion( jEntrySet.getVersion() ); mEntrySet.setMinorVersion( jEntrySet.getMinorVersion() ); // 2. set encapsulated objects for ( psidev.psi.mi.xml254.jaxb.Entry jEntry : jEntrySet.getEntries() ) { mEntrySet.getEntries().add( entryConverter.fromJaxb( jEntry ) ); } return mEntrySet; }
public EntrySet enrichEntrySet(EntrySet entrySet, EnricherConfig config) { EntrySet enrichedSet = new EntrySet(); enrichedSet.setLevel(entrySet.getLevel()); enrichedSet.setVersion(enrichedSet.getVersion()); enrichedSet.setMinorVersion(entrySet.getMinorVersion()); for (Entry entry : entrySet.getEntries()) { Entry enrichedEntry = enrichEntry(entry, config); enrichedSet.getEntries().add(enrichedEntry); } return enrichedSet; }
repoEntry.setRepoEntrySet(repoEntrySet); EntrySet entrySetToWrite = new EntrySet(Arrays.asList(entry), entrySet.getLevel(), entrySet.getVersion(), entrySet.getMinorVersion()); try