public psidev.psi.mi.xml253.jaxb.NamesType.Alias toJaxb( psidev.psi.mi.xml.model.Alias mAlias ) { if ( mAlias == null ) { throw new IllegalArgumentException( "You must give a non null model alias." ); } psidev.psi.mi.xml253.jaxb.NamesType.Alias jAlias = new psidev.psi.mi.xml253.jaxb.NamesType.Alias(); // Initialise the JAXB object reading the model // 1. set attributes jAlias.setType( mAlias.getType() ); jAlias.setTypeAc( mAlias.getTypeAc() ); jAlias.setValue( mAlias.getValue() ); return jAlias; } }
public psidev.psi.mi.xml254.jaxb.Alias toJaxb( psidev.psi.mi.xml.model.Alias mAlias ) { if ( mAlias == null ) { throw new IllegalArgumentException( "You must give a non null model alias." ); } psidev.psi.mi.xml254.jaxb.Alias jAlias = new psidev.psi.mi.xml254.jaxb.Alias(); // Initialise the JAXB object reading the model // 1. set attributes jAlias.setType( mAlias.getType() ); jAlias.setTypeAc( mAlias.getTypeAc() ); jAlias.setValue( mAlias.getValue() ); return jAlias; } }
public A psiToIntact(psidev.psi.mi.xml.model.Alias psiObject) { psiStartConversion(psiObject); String name = psiObject.getValue(); String aliasType = psiObject.getType(); String aliasTypeAc = psiObject.getTypeAc(); if (name.length() == 0) { throw new PsiConversionException("Value in Alias is empty: "+psiObject); } CvAliasType cvAliasType = null; // a type ac must always be a mi term if (aliasType != null) { cvAliasType = new CvAliasType(getInstitution(), aliasType); if( aliasTypeAc != null ) { cvAliasType.setIdentifier(aliasTypeAc); psiMiPopulator.populateWithPsiMi(cvAliasType, aliasTypeAc); } else { if ( log.isWarnEnabled() ) log.warn( "Attempting to build an Alias ("+ aliasType + ") without nameAc, this will result in a CvTopic without Xref" ); } } A alias = newAliasInstance(aliasClass, cvAliasType, name); alias.setOwner(getInstitution()); psiEndConversion(psiObject); return alias; }
for (Alias alias : aliases) { String aliasValue = alias.getValue();
for (Alias alias : psiNames.getAliases()) { if (alias.hasValue()) { synonyms.add(alias.getValue());
final String val = alias.getValue(); if(table.getColumn(type) == null) table.createColumn(type, String.class, false);