public void map(Protein p) throws BridgeFailedException { String newID = null; if(p.getSequence() != null) { newID = localRemap.get(p.getSequence()); if(newID != null){ p.setUniprotkb(newID); if( listener != null ) listener.onSuccessfulMapping(p, Collections.<String>emptyList()); } return; } if(! p.getXrefs().isEmpty()) { newID = localRemap.get(p.getXrefs().iterator().next().getId()); if(newID != null){ p.setUniprotkb(newID); if( listener != null ) listener.onSuccessfulMapping(p, Collections.<String>emptyList()); } return; } if( listener != null ) listener.onFailedMapping(p, Collections.<String>emptyList()); }
proteinToMap.setUniprotkb(sequenceMapping.getFinalUniprotId()); proteinToMap.setUniprotkb(identifierResult.getFinalUniprotId()); proteinToMap.setUniprotkb(sequenceMapping.getFinalUniprotId()); if(listener != null){ listener.onSuccessfulMapping(proteinToMap ,report ); proteinToMap.setUniprotkb(identifierResult.getFinalUniprotId()); if(listener != null){ listener.onSuccessfulMapping(proteinToMap ,report );
proteinToMap.setUniprotkb(identifierResult.getFinalUniprotId()); if(listener != null){ listener.onSuccessfulMapping(proteinToMap ,report ); proteinToMap.setUniprotkb(sequenceMapping.getFinalUniprotId()); if(listener != null){ listener.onSuccessfulMapping(proteinToMap ,report );
proteinToMap.setUniprotkb(sequenceMapping.getFinalUniprotId()); if(listener != null){ listener.onSuccessfulMapping(proteinToMap ,report ); proteinToMap.setUniprotkb(identifierResult.getFinalUniprotId()); if(listener != null){ listener.onSuccessfulMapping(proteinToMap ,report );
p.setFullName(fullName); p.setUniprotkb(firstAc.getValue());
p.setUniprotkb(entity.getPrimaryUniProtAccession().getValue());