@Override public Collection<OWLEntity> visit(OWLOntology ontology) { objects.addAll(ontology.getSignature()); return objects; }
@Override public Collection<OWLEntity> visit(OWLOntology ontology) { objects.addAll(ontology.getSignature()); return objects; }
@Override @Deprecated public Set<OWLEntity> getSignature(Imports imports) { return withReadLock(() -> delegate.getSignature(imports)); }
@Override @Deprecated public Set<OWLEntity> getSignature(Imports imports) { return withReadLock(() -> delegate.getSignature(imports)); }
@Override @Deprecated public Set<OWLEntity> getSignature(Imports imports) { return withReadLock(() -> delegate.getSignature(imports)); }
@Override @Deprecated public Set<OWLEntity> getSignature(Imports imports) { return withReadLock(() -> delegate.getSignature(imports)); }
private Set<OWLEntity> getAllReferencedEntities() { Set<OWLEntity> entities = new HashSet<>(); for(OWLOntology ont : ontologies) { entities.addAll(ont.getSignature()); } entities.remove(mngr.getOWLDataFactory().getOWLThing()); return entities; }
private Set<OWLEntity> getAllReferencedEntities() { Set<OWLEntity> entities = new HashSet<OWLEntity>(); for(OWLOntology ont : ontologies) { entities.addAll(ont.getSignature()); } entities.remove(mngr.getOWLDataFactory().getOWLThing()); return entities; }
private Set<OWLEntity> getAllReferencedEntities() { Set<OWLEntity> entities = new HashSet<>(); for(OWLOntology ont : ontologies) { entities.addAll(ont.getSignature()); } entities.remove(mngr.getOWLDataFactory().getOWLThing()); return entities; }
private void getEntityBasedSearchMetadata(Set<SearchCategory> categories, SearchMetadataImportContext context, SearchMetadataDB db) { List<EntityBasedSearchMDImporter> importers = getEntityBasedSearchMetadataImporters(categories); Set<OWLEntity> processed = new HashSet<>(); for (OWLOntology ontology : context.getOntologies()) { for (OWLEntity entity : ontology.getSignature()) { if (processed.add(entity)) { getSearchMetadataForEntity(entity, context, db, importers); } } } }
@Override public void visit(OWLOntology ont) { for( OWLEntity entity : ont.getSignature() ) { entity.accept( this ); } for( OWLAxiom axiom : ont.getAxioms() ) { if( log.isLoggable( Level.FINE ) ) { log.fine( "Load " + axiom ); } axiom.accept( this ); } }
private void refreshMap() { for (OWLOntology ont : getOntologies()){ for (OWLEntity entity : ont.getSignature()){ extractNSFromEntity(entity); } } }
private void buildEntityNamespaceMap() { for (OWLOntology ont : getOntologies()){ for (OWLEntity entity : ont.getSignature()){ extractNSFromEntity(entity); } } }
private void getEntityBasedSearchMetadata(Set<SearchCategory> categories, SearchMetadataImportContext context, SearchMetadataDB db) { List<EntityBasedSearchMDImporter> importers = getEntityBasedSearchMetadataImporters(categories); Set<OWLEntity> processed = new HashSet<>(); for (OWLOntology ontology : context.getOntologies()) { for (OWLEntity entity : ontology.getSignature()) { if (processed.add(entity)) { getSearchMetadataForEntity(entity, context, db, importers); } } } }
private void getEntityBasedSearchMetadata(Set<SearchCategory> categories, SearchMetadataImportContext context, SearchMetadataDB db) { List<EntityBasedSearchMDImporter> importers = getEntityBasedSearchMetadataImporters(categories); Set<OWLEntity> processed = new HashSet<OWLEntity>(); for (OWLOntology ontology : context.getOntologies()) { for (OWLEntity entity : ontology.getSignature()) { if (processed.add(entity)) { getSearchMetadataForEntity(entity, context, db, importers); } } } }
private void buildEntityNamespaceMap() { for (OWLOntology ont : getOntologies()){ for (OWLEntity entity : ont.getSignature()){ extractNSFromEntity(entity); } } }
private void buildLocalNameDictionary(Dictionary localNameDictionary) { LocalNameExtractor extractor = new LocalNameExtractor(); rootOntology.getSignature(Imports.INCLUDED) .forEach(entity -> { String shortForm = extractor.getLocalName(entity.getIRI()); if (!shortForm.isEmpty()) { localNameDictionary.put(entity, shortForm); } }); }
private void updateEntityMapUsingRegexp() { Set<OWLEntity> entities = new HashSet<>(); for (OWLOntology includedOntology : getOntologies()) { entities.addAll(includedOntology.getSignature()); } for (OWLEntity entity : entities){ String newURIStr = entity.getIRI().toString().replaceAll(getFindValue(), getReplaceWithValue()); addToEntityMap(entity, newURIStr); } }
private void updateEntityMapUsingRegexp() { Set<OWLEntity> entities = new HashSet<>(); for (OWLOntology includedOntology : getOntologies()) { entities.addAll(includedOntology.getSignature()); } for (OWLEntity entity : entities){ String newURIStr = entity.getIRI().toString().replaceAll(getFindValue(), getReplaceWithValue()); addToEntityMap(entity, newURIStr); } }
private Map<String, String> loadUsedNamespaces(OWLOntology ontology) { for (OWLEntity entity : ontology.getSignature()) { final IRI base = IRI.create(XMLUtils.getNCNamePrefix(entity.getIRI() .toString())); nsUtil.getPrefix(base.toString()); } return nsUtil.getNamespace2PrefixMap(); }