@Override @Before public void before() throws Exception { if (studyConfiguration == null) { clearDB(DB_NAME); studyConfiguration = newStudyConfiguration(); } for (int i = 0; i < VCF_TEST_FILE_NAMES.length; i++) { if (etlResult[i] == null) { etlResult[i] = runDefaultETL(inputUri[i], getVariantStorageEngine(), studyConfiguration, new ObjectMap(VariantStorageEngine.Options.ANNOTATE.key(), false) .append(VariantStorageEngine.Options.CALCULATE_STATS.key(), false)); } } dbAdaptor = getVariantStorageEngine().getDBAdaptor(); }