How to use

get

method

in

org.opencb.opencga.core.models.User$UserConfiguration

public List<Filter> getFilters() {
  Object object = get(FILTERS);
  if (object == null) {
    return new LinkedList<>();
  }
  if (isListFilters(object)) {
    return (List<Filter>) object;
  } else {
    //convert with objectMapper
    List<Filter> filters = new ArrayList<>();
    try {
      if (objectMapper == null) {
        objectMapper = new ObjectMapper();
        objectReader = objectMapper.readerFor(Filter.class);
      }
      for (Object filterObject : ((List) object)) {
        filters.add(objectReader.readValue(objectMapper.writeValueAsString(filterObject)));
      }
      setFilters(filters);
      return filters;
    } catch (IOException e) {
      throw new UncheckedIOException(e);
    }
  }
}

if (StringUtils.isNotEmpty(name) && configs.get(name) == null) {
  throw new CatalogException("Error: Cannot fetch configuration with name " + name + ". Configuration name not found.");
Map configMap = StringUtils.isEmpty(name) ? configs : (Map) configs.get(name);

@Test
public void modifyUserTest() throws CatalogDBException {
  ObjectMap genomeMapsConfig = new ObjectMap("lastPosition", "4:1222222:1333333");
  genomeMapsConfig.put("otherConf", Arrays.asList(1, 2, 3, 4, 5));
  catalogUserDBAdaptor.setConfig(user1.getId(), "genomemaps", genomeMapsConfig);
  User user = catalogUserDBAdaptor.get(user1.getId(), null, null).first();
  assertNotNull(user.getConfigs().get("genomemaps"));
  Map<String, Object> genomemaps = (Map<String, Object>) user.getConfigs().get("genomemaps");
  assertNotNull(genomemaps.get("otherConf"));
  assertNotNull(genomemaps.get("lastPosition"));
}

@Override
public QueryResult setConfig(String userId, String name, Map<String, Object> config) throws CatalogDBException {
  long startTime = startQuery();
  // Set the config
  Bson bsonQuery = Filters.eq(QueryParams.ID.key(), userId);
  Bson filterDocument = getMongoDBDocument(config, "Config");
  Bson update = Updates.set(QueryParams.CONFIGS.key() + "." + name, filterDocument);
  QueryResult<UpdateResult> queryResult = userCollection.update(bsonQuery, update, null);
  if (queryResult.first().getModifiedCount() == 0) {
    throw new CatalogDBException("Could not create " + name + " configuration ");
  }
  QueryResult<User> userQueryResult = get(userId, new QueryOptions(), "");
  if (userQueryResult.getNumResults() == 0) {
    throw new CatalogDBException("Internal error: Could not retrieve user " + userId + " information");
  }
  return endQuery("Set config", startTime, Arrays.asList(userQueryResult.first().getConfigs().get(name)));
}

if (configs.get(name) == null) {
  throw new CatalogException("Error: Cannot delete configuration with name " + name + ". Configuration name not found.");
return new QueryResult("Delete configuration", queryResult.getDbTime(), 1, 1, "", "", Arrays.asList(configs.get(name)));