- <init>
All-args constructor.
- equals
- getChromosomeStats
Gets the value of the 'chromosomeStats' field. Statistics per chromosome.
- getConsequenceTypesCounts
Gets the value of the 'consequenceTypesCounts' field. Variants count group by
consequence type. e.g.
- getNumPass
Gets the value of the 'numPass' field. Number of variants with PASS filter
- getNumRareVariants
Gets the value of the 'numRareVariants' field. array of elements to classify
variants according to t
- getNumSamples
Gets the value of the 'numSamples' field. Number of samples in the variants set
- getNumVariants
Gets the value of the 'numVariants' field. Number of variants in the variants
set
- getStdDevQuality
Gets the value of the 'stdDevQuality' field. Standard Deviation of the quality
- getTiTvRatio
Gets the value of the 'tiTvRatio' field. TiTvRatio = num. transitions / num.
transversions
- getVariantBiotypeCounts
Gets the value of the 'variantBiotypeCounts' field. Variants count group by
biotype. e.g. protein-co
- getVariantTypeCounts
Gets the value of the 'variantTypeCounts' field. Variants count group by type.
e.g. SNP, INDEL, MNP,