variantAnnotation.setHgvs(hgvsCalculator.run(normalizedVariantList.get(i), variantGeneList, false)); } catch (VariantNormalizerException e) { logger.error("Unable to normalize variant {}. Leaving empty HGVS.",
variantAnnotation.setHgvs(hgvsCalculator.run(normalizedVariantList.get(i), variantGeneList, false)); } catch (VariantNormalizerException e) { logger.error("Unable to normalize variant {}. Leaving empty HGVS.",
variantAnnotation.setHgvs(new ArrayList<>()); variantAnnotation.setCytoband(new ArrayList<>()); variantAnnotation.setRepeat(new ArrayList<>());
va.setHgvs(getDefault(object, HGVS_FIELD, Collections.emptyList()));