if(currentAnnotation.getHgvs()==null) { currentAnnotation.setHgvs(new ArrayList<String>()); currentAnnotation.getHgvs().add(keyValue[1]); break; case "hgvsp": if(currentAnnotation.getHgvs()==null) { currentAnnotation.setHgvs(new ArrayList<String>()); currentAnnotation.getHgvs().add(keyValue[1]); break; case "polyphen": // Format is PolyPhen=possibly_damaging(0.859)
if (ListUtils.isNotEmpty(variantAnnotation.getHgvs())) { xrefs.addAll(variantAnnotation.getHgvs()); other.add("DCT" + FIELD_SEP + variantAnnotation.getDisplayConsequenceType()); if (variantAnnotation.getHgvs() != null) { for (String hgvs : variantAnnotation.getHgvs()) { other.add("HGVS" + FIELD_SEP + hgvs);
break; case "HGVS": variantAnnotation.getHgvs().add(fields[1]); break; case "CB":
putNotNull(document, HGVS_FIELD, variantAnnotation.getHgvs());
List<String> hgvs = annotation.getHgvs(); if (hgvs != null && hgvs.size() > 0) { builder.addAllHgvs(hgvs);