break; case "strand": consequenceType.setStrand(keyValue[1].equals("1")?"+":"-"); break; case "symbol":
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null
consequenceType.setEnsemblGeneId(gene.getId()); consequenceType.setEnsemblTranscriptId(transcript.getId()); consequenceType.setStrand(transcript.getStrand()); consequenceType.setBiotype(transcript.getBiotype()); consequenceType.setTranscriptAnnotationFlags(transcript.getAnnotationFlags() != null