public Obo2Owl(OWLOntologyManager manager) { idSpaceMap = new HashMap<String,String>(); apToDeclare = new HashSet<OWLAnnotationProperty>(); clsToDeclar = new Hashtable<String, OWLClass>(); typedefToAnnotationProperty = new Hashtable<String, OWLAnnotationProperty>(); init(manager); }
/** * @param obodoc * @param useFreshManager * @return ontology * @throws OWLOntologyCreationException */ public OWLOntology convert(OBODoc obodoc, boolean useFreshManager) throws OWLOntologyCreationException { this.obodoc = obodoc; init(manager); return tr(null); }
public OWLOntology convert(OBODoc obodoc, OWLOntology in) throws OWLOntologyCreationException { this.obodoc = obodoc; init(in.getOWLOntologyManager()); return tr(in); }