/** * Instantiates a new oWLAPI obo2 owl. * * @param manager the manager */ @SuppressWarnings("null") public OWLAPIObo2Owl(OWLOntologyManager manager) { idSpaceMap = new HashMap<>(); apToDeclare = new HashSet<>(); clsToDeclare = new HashMap<>(); typedefToAnnotationProperty = new HashMap<>(); init(manager); }
/** * Instantiates a new oWLAPI obo2 owl. * * @param manager the manager */ @SuppressWarnings("null") public OWLAPIObo2Owl(OWLOntologyManager manager) { idSpaceMap = new HashMap<>(); apToDeclare = new HashSet<>(); clsToDeclare = new HashMap<>(); typedefToAnnotationProperty = new HashMap<>(); init(manager); }
/** * Instantiates a new oWLAPI obo2 owl. * * @param manager the manager */ @SuppressWarnings("null") public OWLAPIObo2Owl(OWLOntologyManager manager) { idSpaceMap = new HashMap<>(); apToDeclare = new HashSet<>(); clsToDeclare = new HashMap<>(); typedefToAnnotationProperty = new HashMap<>(); init(manager); }
/** * Instantiates a new oWLAPI obo2 owl. * * @param manager the manager */ @SuppressWarnings("null") public OWLAPIObo2Owl(OWLOntologyManager manager) { idSpaceMap = new HashMap<>(); apToDeclare = new HashSet<>(); clsToDeclare = new HashMap<>(); typedefToAnnotationProperty = new HashMap<>(); init(manager); }
/** * Convert. * * @param doc the obodoc * @return ontology * @throws OWLOntologyCreationException the oWL ontology creation exception */ public OWLOntology convert(OBODoc doc) throws OWLOntologyCreationException { obodoc = doc; init(manager); return tr(manager.createOntology()); }
/** * Convert. * * @param doc the obodoc * @param in the in * @return the oWL ontology */ public OWLOntology convert(OBODoc doc, OWLOntology in) { obodoc = doc; init(in.getOWLOntologyManager()); return tr(in); }
/** * Convert. * * @param doc the obodoc * @param in the in * @return the oWL ontology */ public OWLOntology convert(OBODoc doc, OWLOntology in) { obodoc = doc; init(in.getOWLOntologyManager()); return tr(in); }
/** * Convert. * * @param doc the obodoc * @return ontology * @throws OWLOntologyCreationException the oWL ontology creation exception */ public OWLOntology convert(OBODoc doc) throws OWLOntologyCreationException { obodoc = doc; init(manager); return tr(manager.createOntology()); }
/** * Convert. * * @param doc the obodoc * @return ontology * @throws OWLOntologyCreationException the oWL ontology creation exception */ public OWLOntology convert(OBODoc doc) throws OWLOntologyCreationException { obodoc = doc; init(manager); return tr(manager.createOntology()); }
/** * Convert. * * @param doc the obodoc * @param in the in * @return the oWL ontology */ public OWLOntology convert(OBODoc doc, OWLOntology in) { obodoc = doc; init(in.getOWLOntologyManager()); return tr(in); }
/** * Convert. * * @param doc the obodoc * @param in the in * @return the oWL ontology */ public OWLOntology convert(OBODoc doc, OWLOntology in) { obodoc = doc; init(in.getOWLOntologyManager()); return tr(in); }
/** * Convert. * * @param doc the obodoc * @return ontology * @throws OWLOntologyCreationException the oWL ontology creation exception */ public OWLOntology convert(OBODoc doc) throws OWLOntologyCreationException { obodoc = doc; init(manager); return tr(manager.createOntology()); }