public HmmscanPerDomainTableParser( final File input_file, final String species, final INDIVIDUAL_SCORE_CUTOFF individual_cutoff_applies_to, final boolean allow_proteins_with_same_name ) { _input_file = input_file; _species = species; _filter = null; _filter_type = FilterType.NONE; _ind_cutoff = individual_cutoff_applies_to; _allow_proteins_with_same_name = allow_proteins_with_same_name; init(); }
public HmmscanPerDomainTableParser( final File input_file, final String species, final INDIVIDUAL_SCORE_CUTOFF individual_cutoff_applies_to ) { _input_file = input_file; _species = species; _filter = null; _filter_type = FilterType.NONE; _ind_cutoff = individual_cutoff_applies_to; _allow_proteins_with_same_name = false; init(); }
public HmmscanPerDomainTableParser( final File input_file, final String species, final Set<String> filter, final FilterType filter_type, final INDIVIDUAL_SCORE_CUTOFF individual_cutoff_applies_to ) { _input_file = input_file; _species = species; _filter = filter; _filter_type = filter_type; _ind_cutoff = individual_cutoff_applies_to; _allow_proteins_with_same_name = false; init(); }
public HmmscanPerDomainTableParser( final File input_file, final String species, final Set<String> filter, final FilterType filter_type, final INDIVIDUAL_SCORE_CUTOFF individual_cutoff_applies_to, final boolean allow_proteins_with_same_name ) { _input_file = input_file; _species = species; _filter = filter; _filter_type = filter_type; _ind_cutoff = individual_cutoff_applies_to; _allow_proteins_with_same_name = allow_proteins_with_same_name; init(); }