private void init() { _e_value_maximum = HmmPfamOutputParser.E_VALUE_MAXIMUM_DEFAULT; setIgnoreDufs( HmmPfamOutputParser.IGNORE_DUFS_DEFAULT ); setReturnType( HmmPfamOutputParser.RETURN_TYPE_DEFAULT ); _max_allowed_overlap = HmmPfamOutputParser.MAX_ALLOWED_OVERLAP_DEFAULT; setIndividualDomainScoreCutoffs( null ); setIgnoreEngulfedDomains( false ); setIgnoreVirusLikeIds( false ); setAllowNonUniqueQuery( false ); setVerbose( false ); intitCounts(); }