- <init>
- parsePDBFile
Parse a PDB file and return a datastructure implementing PDBStructure interface.
- setFileParsingParameters
- addCharges
Add the charges to the Structure
- assignAsymIds
Assign asym ids following the rules used by the PDB to assign asym ids in mmCIF
files
- assignChainsAndEntities
Here we assign chains following the mmCIF data model: one chain per polymer, one
chain per non-polym
- authorBuilder
- buildjournalArticle
- compndValueSetter
Set the value in the current molId object
- conect_helper
safes repeating a few lines ...
- findChains
Gets all chains with given chainName from given models list
- getBufferedReader