private byte[] getTile(byte[] buf, Region tileParams, Region srcParams) { MetadataRetrieve retrieve = getMetadataRetrieve(); int type = FormatTools.pixelTypeFromString(retrieve.getPixelsType(series).toString()); int channel_count = getSamplesPerPixel(); int bytesPerPixel = FormatTools.getBytesPerPixel(type); int tileSize = tileParams.width * tileParams.height * bytesPerPixel * channel_count; byte [] returnBuf = new byte[tileSize]; for (int row = tileParams.y; row != tileParams.y + tileParams.height; row++) { for (int sampleoffset = 0; sampleoffset < (tileParams.width * channel_count); sampleoffset++) { int channel_index = sampleoffset / tileParams.width; int channel_offset = (sampleoffset - (tileParams.width * channel_index)) * bytesPerPixel; int full_row_width = srcParams.width * bytesPerPixel; int full_plane_size = full_row_width * srcParams.height; int xoffset = (tileParams.x - srcParams.x) * bytesPerPixel; int yoffset = (row - srcParams.y) * full_row_width; int row_offset = (row - tileParams.y) * tileParams.width * bytesPerPixel; int src_index = yoffset + xoffset + channel_offset + (channel_index * full_plane_size); int dest_index = (tileParams.height * tileParams.width * channel_index * bytesPerPixel) + row_offset; for (int pixelByte = 0; pixelByte < bytesPerPixel; pixelByte++) { returnBuf[dest_index + channel_offset + pixelByte] = buf[src_index + pixelByte]; } } } return returnBuf; }
private byte[] getTile(byte[] buf, Region tileParams, Region srcParams) { MetadataRetrieve retrieve = getMetadataRetrieve(); int type = FormatTools.pixelTypeFromString(retrieve.getPixelsType(series).toString()); int channel_count = getSamplesPerPixel(); int bytesPerPixel = FormatTools.getBytesPerPixel(type); int tileSize = tileParams.width * tileParams.height * bytesPerPixel * channel_count; byte [] returnBuf = new byte[tileSize]; for (int row = tileParams.y; row != tileParams.y + tileParams.height; row++) { for (int sampleoffset = 0; sampleoffset < (tileParams.width * channel_count); sampleoffset++) { int channel_index = sampleoffset / tileParams.width; int channel_offset = (sampleoffset - (tileParams.width * channel_index)) * bytesPerPixel; int full_row_width = srcParams.width * bytesPerPixel; int full_plane_size = full_row_width * srcParams.height; int xoffset = (tileParams.x - srcParams.x) * bytesPerPixel; int yoffset = (row - srcParams.y) * full_row_width; int row_offset = (row - tileParams.y) * tileParams.width * bytesPerPixel; int src_index = yoffset + xoffset + channel_offset + (channel_index * full_plane_size); int dest_index = (tileParams.height * tileParams.width * channel_index * bytesPerPixel) + row_offset; for (int pixelByte = 0; pixelByte < bytesPerPixel; pixelByte++) { returnBuf[dest_index + channel_offset + pixelByte] = buf[src_index + pixelByte]; } } } return returnBuf; }
protected void setupTiffSaver() throws IOException { out.close(); out = createOutputStream(); tiffSaver = createTiffSaver(); MetadataRetrieve retrieve = getMetadataRetrieve(); boolean littleEndian = false; if (retrieve.getPixelsBigEndian(series) != null) { littleEndian = !retrieve.getPixelsBigEndian(series).booleanValue(); } else if (retrieve.getPixelsBinDataCount(series) == 0) { littleEndian = !retrieve.getPixelsBinDataBigEndian(series, 0).booleanValue(); } tiffSaver.setWritingSequentially(sequential); tiffSaver.setLittleEndian(littleEndian); tiffSaver.setBigTiff(isBigTiff); tiffSaver.setCodecOptions(options); }
protected void setupTiffSaver() throws IOException { out.close(); out = createOutputStream(); tiffSaver = createTiffSaver(); MetadataRetrieve retrieve = getMetadataRetrieve(); boolean littleEndian = false; if (retrieve.getPixelsBigEndian(series) != null) { littleEndian = !retrieve.getPixelsBigEndian(series).booleanValue(); } else if (retrieve.getPixelsBinDataCount(series) == 0) { littleEndian = !retrieve.getPixelsBinDataBigEndian(series, 0).booleanValue(); } tiffSaver.setWritingSequentially(sequential); tiffSaver.setLittleEndian(littleEndian); tiffSaver.setBigTiff(isBigTiff); tiffSaver.setCodecOptions(options); }
MetadataRetrieve retrieve = getMetadataRetrieve(); long totalBytes = 0; for (int i=0; i<retrieve.getImageCount(); i++) {
MetadataRetrieve retrieve = getMetadataRetrieve(); long totalBytes = 0; for (int i=0; i<retrieve.getImageCount(); i++) {
MetadataRetrieve retrieve = getMetadataRetrieve(); int type = FormatTools.pixelTypeFromString( retrieve.getPixelsType(series).toString());
MetadataRetrieve retrieve = getMetadataRetrieve(); int type = FormatTools.pixelTypeFromString( retrieve.getPixelsType(series).toString());
int no, byte[] buf, IFD ifd, int x, int y, int w, int h) throws IOException, FormatException { MetadataRetrieve retrieve = getMetadataRetrieve(); boolean littleEndian = false; if (retrieve.getPixelsBigEndian(series) != null) {
int no, byte[] buf, IFD ifd, int x, int y, int w, int h) throws IOException, FormatException { MetadataRetrieve retrieve = getMetadataRetrieve(); boolean littleEndian = false; if (retrieve.getPixelsBigEndian(series) != null) {